Information for 20-TGTCTCTTKC (Motif 25)

A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C
Reverse Opposite:
A T C G G T C A C T G A G T C A T C A G G T C A C A T G G T C A A T G C T G C A
p-value:1e-6
log p-value:-1.603e+01
Information Content per bp:1.733
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif2.92%
Number of Background Sequences with motif398.2
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets47.7 +/- 24.0bp
Average Position of motif in Background49.1 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGTCTCTTKC--
CTGTCTGTCACCT
 A C G T A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGTCTCTTKC--
TGTCTGDCACCT
 A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGTCTCTTKC
ACTTTCACTTTC
 A C G T A C G T A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C
C T G A A T G C G A C T C G A T A G C T A G T C C G T A A T G C A C G T A C G T G A C T A G T C

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGTCTCTTKC
AGTTTCAGTTTC
 A C G T A C G T A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C
C T G A A T C G A G C T A G C T A C G T T A G C C T G A T A C G C G A T A C G T G A C T A G T C

IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGTCTCTTKC
ASTTTCASTTYC
 A C G T A C G T A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C
C T G A A T G C G C A T G A C T A G C T A G T C C T G A A T G C G C A T C G A T A G T C A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGTCTCTTKC
CTGTCTGG---
 A C G T A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGTCTCTTKC
ACTTTCACTTTC
 A C G T A C G T A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C
T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TGTCTCTTKC
VBSYGTCTGG---
 A C G T A C G T A C G T A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

IRF2/MA0051.1/Jaspar

Match Rank:9
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------TGTCTCTTKC-
GTTTTGCTTTCACTTTCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C A C G T
C A T G C G A T C G A T G C A T A G C T T C A G A T C G A C G T A C G T A C G T A G T C C T A G A G T C A C G T C G A T A C G T A G T C T A G C

IRF7/MA0772.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGTCTCTTKC--
ANTTTCGCTTTCGN
 A C G T A C G T A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C A C G T A C G T
C G T A A G T C C G A T A C G T C A G T G A T C C T A G A G T C A C G T C G A T A C G T T G A C A C T G C A G T