Information for 4-GCATTTCGAA (Motif 9)

A C T G A T G C C T G A A C G T C G A T C G A T T A G C A C T G C G T A C G T A
Reverse Opposite:
A C G T C G A T G T A C A T C G C G T A C G T A C G T A A G C T A T C G A G T C
p-value:1e-7
log p-value:-1.696e+01
Information Content per bp:1.775
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif7.48%
Number of Background Sequences with motif391.0
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets49.6 +/- 25.5bp
Average Position of motif in Background48.7 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCATTTCGAA----
ACCGTGACTAATTNN
 A C G T A C T G A T G C C T G A A C G T C G A T C G A T T A G C A C T G C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------GCATTTCGAA
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C C T G A A C G T C G A T C G A T T A G C A C T G C G T A C G T A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

TEF/MA0843.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCATTTCGAA---
-TATTACGTAACA
 A C T G A T G C C T G A A C G T C G A T C G A T T A G C A C T G C G T A C G T A A C G T A C G T A C G T
A C G T A G C T T C G A G C A T C G A T C T G A G A T C C T A G A G C T G C T A C T G A A G T C T G C A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GCATTTCGAA-
ATTTGCATAACAAAG
 A C G T A C G T A C G T A C G T A C T G A T G C C T G A A C G T C G A T C G A T T A G C A C T G C G T A C G T A A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

DBP/MA0639.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCATTTCGAA---
-TATTACGTAACA
 A C T G A T G C C T G A A C G T C G A T C G A T T A G C A C T G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T T C G A G C A T A C G T C T G A A G T C T C A G A G C T T G C A C G T A A G T C T C G A

POU4F1/MA0790.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCATTTCGAA--
ATGAATAATTAATG
 A C G T A C G T A C T G A T G C C T G A A C G T C G A T C G A T T A G C A C T G C G T A C G T A A C G T A C G T
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCATTTCGAA-
--ATTGCATAA
 A C T G A T G C C T G A A C G T C G A T C G A T T A G C A C T G C G T A C G T A A C G T
A C G T A C G T T C G A G A C T A C G T C T A G G A T C T C G A G A C T G T C A G C T A

POU4F3/MA0791.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCATTTCGAA----
ATGCATAATTAATGAG
 A C G T A C G T A C T G A T G C C T G A A C G T C G A T C G A T T A G C A C T G C G T A C G T A A C G T A C G T A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

POU4F2/MA0683.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCATTTCGAA----
ATGCATAATTAATGAG
 A C G T A C G T A C T G A T G C C T G A A C G T C G A T C G A T T A G C A C T G C G T A C G T A A C G T A C G T A C G T A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

CEBPD/MA0836.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GCATTTCGAA--
--ATTGCGCAAT
 A C T G A T G C C T G A A C G T C G A T C G A T T A G C A C T G C G T A C G T A A C G T A C G T
A C G T A C G T T C G A A C G T C A G T C A T G A G T C C T A G G A T C G T C A G T C A A G C T