Information for 6-CTGCCTAGTAGAGTKY (Motif 6)

A G T C C G A T A C T G A G T C T A G C A C G T C T G A A C T G A C G T C G T A A C T G T C G A C T A G A C G T A C G T A G C T
Reverse Opposite:
T C G A G T C A G T C A A G T C A G C T G T A C A C G T C G T A G T A C A G C T C G T A A T C G T C A G A G T C C G T A A C T G
p-value:1e-12
log p-value:-2.840e+01
Information Content per bp:1.754
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.1 +/- 27.3bp
Average Position of motif in Background37.2 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----CTGCCTAGTAGAGTKY
GATAACATCCTAGTAG-----
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A G T C T A G C A C G T C T G A A C T G A C G T C G T A A C T G T C G A C T A G A C G T A C G T A G C T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CTGCCTAGTAGAGTKY
CTGTCTGG--------
 A G T C C G A T A C T G A G T C T A G C A C G T C T G A A C T G A C G T C G T A A C T G T C G A C T A G A C G T A C G T A G C T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CTGCCTAGTAGAGTKY
TWGTCTGV--------
 A G T C C G A T A C T G A G T C T A G C A C G T C T G A A C T G A C G T C G T A A C T G T C G A C T A G A C G T A C G T A G C T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.48
Offset:0
Orientation:forward strand
Alignment:CTGCCTAGTAGAGTKY
AGGCCTAG--------
 A G T C C G A T A C T G A G T C T A G C A C G T C T G A A C T G A C G T C G T A A C T G T C G A C T A G A C G T A C G T A G C T
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.47
Offset:-4
Orientation:reverse strand
Alignment:----CTGCCTAGTAGAGTKY
NNTNNTGTCTGGNNTNG---
 A C G T A C G T A C G T A C G T A G T C C G A T A C T G A G T C T A G C A C G T C T G A A C T G A C G T C G T A A C T G T C G A C T A G A C G T A C G T A G C T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:CTGCCTAGTAGAGTKY
-TGTCTAGACG-----
 A G T C C G A T A C T G A G T C T A G C A C G T C T G A A C T G A C G T C G T A A C T G T C G A C T A G A C G T A C G T A G C T
A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.46
Offset:-2
Orientation:forward strand
Alignment:--CTGCCTAGTAGAGTKY
VBSYGTCTGG--------
 A C G T A C G T A G T C C G A T A C T G A G T C T A G C A C G T C T G A A C T G A C G T C G T A A C T G T C G A C T A G A C G T A C G T A G C T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.45
Offset:-1
Orientation:forward strand
Alignment:-CTGCCTAGTAGAGTKY
GCTGTG-----------
 A C G T A G T C C G A T A C T G A G T C T A G C A C G T C T G A A C T G A C G T C G T A A C T G T C G A C T A G A C G T A C G T A G C T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:9
Score:0.44
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCTAGTAGAGTKY
NCTTCCNGGAAGNN---
 A C G T A G T C C G A T A C T G A G T C T A G C A C G T C T G A A C T G A C G T C G T A A C T G T C G A C T A G A C G T A C G T A G C T
T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:10
Score:0.44
Offset:2
Orientation:reverse strand
Alignment:CTGCCTAGTAGAGTKY--
--NCGTATTATAATCNTA
 A G T C C G A T A C T G A G T C T A G C A C G T C T G A A C T G A C G T C G T A A C T G T C G A C T A G A C G T A C G T A G C T A C G T A C G T
A C G T A C G T A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A