Information for 11-CCCCGTGTGGCCA (Motif 9)

A G T C T A G C A G T C T G A C T C A G G A C T A C T G C G A T A C T G A C T G G A T C G T A C C T G A
Reverse Opposite:
G A C T A C T G C A T G G T A C G T A C C G T A G T A C C G T A A G T C A C T G C T A G A T C G A C T G
p-value:1e-12
log p-value:-2.955e+01
Information Content per bp:1.777
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif12.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets58.3 +/- 21.1bp
Average Position of motif in Background57.3 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PLAG1/MA0163.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCCCGTGTGGCCA-
CCCCCTTGGGCCCC
 A G T C T A G C A G T C T G A C T C A G G A C T A C T G C G A T A C T G A C T G G A T C G T A C C T G A A C G T
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------CCCCGTGTGGCCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T A G C A G T C T G A C T C A G G A C T A C T G C G A T A C T G A C T G G A T C G T A C C T G A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CCCCGTGTGGCCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T A G C A G T C T G A C T C A G G A C T A C T G C G A T A C T G A C T G G A T C G T A C C T G A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0102.1_Zic2_1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCCCGTGTGGCCA
ACCCCCCCGGGGGGN--
 A C G T A C G T A C G T A C G T A G T C T A G C A G T C T G A C T C A G G A C T A C T G C G A T A C T G A C T G G A T C G T A C C T G A
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCCCGTGTGGCCA-
--CAGTGTGGTCGC
 A G T C T A G C A G T C T G A C T C A G G A C T A C T G C G A T A C T G A C T G G A T C G T A C C T G A A C G T
A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCCCGTGTGGCCA
TGWCCTCARNTGACC-
 A C G T A C G T A C G T A G T C T A G C A G T C T G A C T C A G G A C T A C T G C G A T A C T G A C T G G A T C G T A C C T G A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------CCCCGTGTGGCCA
TGCAGTTCCNNNNNTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T A G C A G T C T G A C T C A G G A C T A C T G C G A T A C T G A C T G G A T C G T A C C T G A
C G A T T A C G G A T C G C T A T C A G G A C T C G A T G T A C G A T C G T C A T C G A T G A C C G T A C T A G G A C T C T A G C T A G G T A C A G T C C G T A

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCCCGTGTGGCCA
CACCCCCGGGGGGG--
 A C G T A C G T A C G T A G T C T A G C A G T C T G A C T C A G G A C T A C T G C G A T A C T G A C T G G A T C G T A C C T G A
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCCCGTGTGGCCA
CCCCCCCGGGGGGGT-
 A C G T A C G T A C G T A G T C T A G C A G T C T G A C T C A G G A C T A C T G C G A T A C T G A C T G G A T C G T A C C T G A
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.54
Offset:-9
Orientation:forward strand
Alignment:---------CCCCGTGTGGCCA
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T A G C A G T C T G A C T C A G G A C T A C T G C G A T A C T G A C T G G A T C G T A C C T G A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T