Information for 18-GTCGCCATRGCGA (Motif 20)

C T A G G C A T A G T C A C T G A G T C A G T C C G T A A C G T T C A G A C T G A G T C C T A G C G T A
Reverse Opposite:
G C A T A G T C T C A G G T A C A G T C C G T A C G A T T C A G A C T G T G A C C T A G C G T A A G T C
p-value:1e-5
log p-value:-1.219e+01
Information Content per bp:1.706
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif177.6
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets38.1 +/- 25.9bp
Average Position of motif in Background49.7 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GTCGCCATRGCGA
NGTTGCCATGGCAA
 A C G T C T A G G C A T A G T C A C T G A G T C A G T C C G T A A C G T T C A G A C T G A G T C C T A G C G T A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GTCGCCATRGCGA--
GTTGCCATGGCAACM
 C T A G G C A T A G T C A C T G A G T C A G T C C G T A A C G T T C A G A C T G A G T C C T A G C G T A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GTCGCCATRGCGA
GGTTGCCATGGCAA
 A C G T C T A G G C A T A G T C A C T G A G T C A G T C C G T A A C G T T C A G A C T G A G T C C T A G C G T A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX3/MA0798.1/Jaspar

Match Rank:4
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GTCGCCATRGCGA--
CGTTGCCATGGCAACN
 A C G T C T A G G C A T A G T C A C T G A G T C A G T C C G T A A C G T T C A G A C T G A G T C C T A G C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GTCGCCATRGCGA--
CGTTGCCATGGCAACN
 A C G T C T A G G C A T A G T C A C T G A G T C A G T C C G T A A C G T T C A G A C T G A G T C C T A G C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GTCGCCATRGCGA-
GTTGCCATGGNAAC
 C T A G G C A T A G T C A C T G A G T C A G T C C G T A A C G T T C A G A C T G A G T C C T A G C G T A A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GTCGCCATRGCGA-
CGGTTGCCATGGCAAC
 A C G T A C G T C T A G G C A T A G T C A C T G A G T C A G T C C G T A A C G T T C A G A C T G A G T C C T A G C G T A A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GTCGCCATRGCGA--
CGTTGCCATGGCAACG
 A C G T C T A G G C A T A G T C A C T G A G T C A G T C C G T A A C G T T C A G A C T G A G T C C T A G C G T A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GTCGCCATRGCGA--
CGTTGCCATGGCAACG
 A C G T C T A G G C A T A G T C A C T G A G T C A G T C C G T A A C G T T C A G A C T G A G T C C T A G C G T A A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

ZBED1/MA0749.1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTCGCCATRGCGA
TATGTCGCGATAG---
 A C G T A C G T A C G T C T A G G C A T A G T C A C T G A G T C A G T C C G T A A C G T T C A G A C T G A G T C C T A G C G T A
G A C T T G C A C G A T C T A G A G C T A G T C C T A G A G T C T C A G C T G A A G C T G C T A C A T G A C G T A C G T A C G T