Information for 12-GGGATTGGCT (Motif 14)

C A T G T C A G A C T G G T C A C G A T C G A T A T C G A T C G A G T C A G C T
Reverse Opposite:
T C G A A C T G A T G C T A G C C G T A C G T A A C G T A G T C A G T C G T A C
p-value:1e-9
log p-value:-2.127e+01
Information Content per bp:1.835
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif168.1
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets59.3 +/- 20.9bp
Average Position of motif in Background50.4 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GGGATTGGCT---
AGGGGGATTAGCTGCC
 A C G T A C G T A C G T C A T G T C A G A C T G G T C A C G A T C G A T A T C G A T C G A G T C A G C T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GGGATTGGCT---
-TGATTGGCTANN
 C A T G T C A G A C T G G T C A C G A T C G A T A T C G A T C G A G T C A G C T A C G T A C G T A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GGGATTGGCT
CCGATTGGCT
 C A T G T C A G A C T G G T C A C G A T C G A T A T C G A T C G A G T C A G C T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

PH0123.1_Obox3/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGGATTGGCT--
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C G T C A T G T C A G A C T G G T C A C G A T C G A T A T C G A T C G A G T C A G C T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGGATTGGCT
CNGTGATTTN--
 A C G T A C G T C A T G T C A G A C T G G T C A C G A T C G A T A T C G A T C G A G T C A G C T
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGGATTGGCT-----
CTGATTGGTCNATTT
 C A T G T C A G A C T G G T C A C G A T C G A T A T C G A T C G A G T C A G C T A C G T A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

PH0015.1_Crx/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GGGATTGGCT-
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A C G T C A T G T C A G A C T G G T C A C G A T C G A T A T C G A T C G A G T C A G C T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGGATTGGCT
-GGATTAGC-
 C A T G T C A G A C T G G T C A C G A T C G A T A T C G A T C G A G T C A G C T
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GGGATTGGCT
----TTGGCA
 C A T G T C A G A C T G G T C A C G A T C G A T A T C G A T C G A G T C A G C T
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GGGATTGGCT---
NNAAGGGATTAACGANT
 A C G T A C G T A C G T A C G T C A T G T C A G A C T G G T C A C G A T C G A T A T C G A T C G A G T C A G C T A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T