Information for 3-CCCAGCCGGCTTC (Motif 8)

A G T C A G T C A G T C C G T A A C T G A G T C A G T C A C T G A T C G G T A C A G C T A C G T A G T C
Reverse Opposite:
A C T G G T C A C T G A C A T G A T G C A G T C A C T G A C T G G T A C A C G T A C T G C T A G A C T G
p-value:1e-9
log p-value:-2.155e+01
Information Content per bp:1.880
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.8 +/- 26.4bp
Average Position of motif in Background34.2 +/- 4.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCCGGCTTC-
DCHCAGCAGGRGGCC
 A C G T A G T C A G T C A G T C C G T A A C T G A G T C A G T C A C T G A T C G G T A C A G C T A C G T A G T C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0077.1_Spdef_1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCCAGCCGGCTTC--
GTACATCCGGATTTTT
 A C G T A G T C A G T C A G T C C G T A A C T G A G T C A G T C A C T G A T C G G T A C A G C T A C G T A G T C A C G T A C G T
T C A G G A C T C T G A A G T C C G T A C G A T T A G C G T A C A C T G A T C G C T G A G C A T G C A T G A C T A G C T A G C T

SPDEF/MA0686.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCCAGCCGGCTTC
TACATCCGGGT--
 A G T C A G T C A G T C C G T A A C T G A G T C A G T C A C T G A T C G G T A C A G C T A C G T A G T C
G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCCGGCTTC
DCTCAGCAGG----
 A C G T A G T C A G T C A G T C C G T A A C T G A G T C A G T C A C T G A T C G G T A C A G C T A C G T A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCCAGCCGGCTTC
CACAGCAGGGGG-
 A G T C A G T C A G T C C G T A A C T G A G T C A G T C A C T G A T C G G T A C A G C T A C G T A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCCGGCTTC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C T G A G T C A G T C A C T G A T C G G T A C A G C T A C G T A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCCGGCTTC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C T G A G T C A G T C A C T G A T C G G T A C A G C T A C G T A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCCGGCTTC
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C T G A G T C A G T C A C T G A T C G G T A C A G C T A C G T A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

TFCP2/MA0145.3/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCCAGCCGGCTTC
--AAACCGGTTT-
 A G T C A G T C A G T C C G T A A C T G A G T C A G T C A C T G A T C G G T A C A G C T A C G T A G T C
A C G T A C G T C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T A C G T

ETV5/MA0765.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCCAGCCGGCTTC
NACTTCCGGT---
 A G T C A G T C A G T C C G T A A C T G A G T C A G T C A C T G A T C G G T A C A G C T A C G T A G T C
G A T C T C G A A G T C C G A T C G A T G T A C G T A C A C T G A T C G G A C T A C G T A C G T A C G T