Information for 2-CTGACCTGGGTCA (Motif 2)

T A G C C A G T A C T G T G C A G A T C G T A C A G C T C T A G C A T G A C T G A C G T A G T C G C T A
Reverse Opposite:
C G A T A C T G G T C A A G T C G T A C A G T C C T G A A C T G C T A G A C G T A G T C G T C A A T C G
p-value:1e-15
log p-value:-3.553e+01
Information Content per bp:1.755
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.68%
Number of Background Sequences with motif124.4
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets53.9 +/- 19.7bp
Average Position of motif in Background51.2 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTGACCTGGGTCA
CTGACCTTTG---
 T A G C C A G T A C T G T G C A G A T C G T A C A G C T C T A G C A T G A C T G A C G T A G T C G C T A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTGACCTGGGTCA----
-CGCGCCGGGTCACGTA
 T A G C C A G T A C T G T G C A G A T C G T A C A G C T C T A G C A T G A C T G A C G T A G T C G C T A A C G T A C G T A C G T A C G T
A C G T T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTGACCTGGGTCA----
-AGAGCGGGGTCAAGTA
 T A G C C A G T A C T G T G C A G A T C G T A C A G C T C T A G C A T G A C T G A C G T A G T C G C T A A C G T A C G T A C G T A C G T
A C G T G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PKNOX2/MA0783.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTGACCTGGGTCA
-TGACAGGTGTCA
 T A G C C A G T A C T G T G C A G A T C G T A C A G C T C T A G C A T G A C T G A C G T A G T C G C T A
A C G T C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGGGTCA
-TGACCT------
 T A G C C A G T A C T G T G C A G A T C G T A C A G C T C T A G C A T G A C T G A C G T A G T C G C T A
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CTGACCTGGGTCA
---AAYTAGGTCA
 T A G C C A G T A C T G T G C A G A T C G T A C A G C T C T A G C A T G A C T G A C G T A G T C G C T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

PKNOX1/MA0782.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTGACCTGGGTCA
-TGACAGGTGTCA
 T A G C C A G T A C T G T G C A G A T C G T A C A G C T C T A G C A T G A C T G A C G T A G T C G C T A
A C G T G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A

TGIF2/MA0797.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTGACCTGGGTCA
-TGACAGCTGTCA
 T A G C C A G T A C T G T G C A G A T C G T A C A G C T C T A G C A T G A C T G A C G T A G T C G C T A
A C G T G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGGGTCA
-TGACCTTGAT--
 T A G C C A G T A C T G T G C A G A T C G T A C A G C T C T A G C A T G A C T G A C G T A G T C G C T A
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGGGTCA
-TGACCTYA----
 T A G C C A G T A C T G T G C A G A T C G T A C A G C T C T A G C A T G A C T G A C G T A G T C G C T A
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T