Information for 5-AGGTCAAAGT (Motif 6)

C T G A T A C G C A T G C G A T G T A C G C T A C T G A T C G A A T C G A C G T
Reverse Opposite:
T G C A A T G C A G C T G A C T C G A T C A T G G C T A G T A C A T G C G A C T
p-value:1e-13
log p-value:-3.149e+01
Information Content per bp:1.651
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif7.51%
Number of Background Sequences with motif1206.1
Percentage of Background Sequences with motif2.55%
Average Position of motif in Targets42.4 +/- 19.9bp
Average Position of motif in Background47.8 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAAGT-----
GGGGTCAAAGTCCAAT
 A C G T C T G A T A C G C A T G C G A T G T A C G C T A C T G A T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AGGTCAAAGT--
AGGTCAAGGTCA
 C T G A T A C G C A T G C G A T G T A C G C T A C T G A T C G A A T C G A C G T A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAAAGT
TRAGGTCA----
 A C G T A C G T C T G A T A C G C A T G C G A T G T A C G C T A C T G A T C G A A T C G A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AGGTCAAAGT
AGGTCA----
 C T G A T A C G C A T G C G A T G T A C G C T A C T G A T C G A A T C G A C G T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AGGTCAAAGT--
AGGTCAAGGTCA
 C T G A T A C G C A T G C G A T G T A C G C T A C T G A T C G A A T C G A C G T A C G T A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---AGGTCAAAGT---
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C T G A T A C G C A T G C G A T G T A C G C T A C T G A T C G A A T C G A C G T A C G T A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAAAGT---
AGAGTCCAAAGTCCA
 A C G T A C G T C T G A T A C G C A T G C G A T G T A C G C T A C T G A T C G A A T C G A C G T A C G T A C G T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----AGGTCAAAGT
ATCAAGGTCA----
 A C G T A C G T A C G T A C G T C T G A T A C G C A T G C G A T G T A C G C T A C T G A T C G A A T C G A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAAGT
AAGGTCAC---
 A C G T C T G A T A C G C A T G C G A T G T A C G C T A C T G A T C G A A T C G A C G T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAAAGT
AGRGGTCA----
 A C G T A C G T C T G A T A C G C A T G C G A T G T A C G C T A C T G A T C G A A T C G A C G T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T