Information for 12-CCTTGCCAGC (Motif 24)

G T A C A G T C A C G T A C G T A T C G A G T C A G T C C G T A C T A G G T A C
Reverse Opposite:
A C T G G A T C G C A T A C T G A C T G T A G C T G C A C G T A A C T G C A T G
p-value:1e-8
log p-value:-1.990e+01
Information Content per bp:1.834
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.41%
Number of Background Sequences with motif438.5
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets51.3 +/- 22.7bp
Average Position of motif in Background51.4 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CCTTGCCAGC
NNACTTGCCTT-
 A C G T A C G T G T A C A G T C A C G T A C G T A T C G A G T C A G T C C G T A C T A G G T A C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCTTGCCAGC
-CTTGGCAA-
 G T A C A G T C A C G T A C G T A T C G A G T C A G T C C G T A C T A G G T A C
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCTTGCCAGC-
--ATGCCAACC
 G T A C A G T C A C G T A C G T A T C G A G T C A G T C C G T A C T A G G T A C A C G T
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCTTGCCAGC
-CGTGCCAAG
 G T A C A G T C A C G T A C G T A T C G A G T C A G T C C G T A C T A G G T A C
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCTTGCCAGC
---TGCCAA-
 G T A C A G T C A C G T A C G T A T C G A G T C A G T C C G T A C T A G G T A C
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCTTGCCAGC
--TTGACAGC
 G T A C A G T C A C G T A C G T A T C G A G T C A G T C C G T A C T A G G T A C
A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCTTGCCAGC-----
ACTATGCCAACCTACC
 A C G T G T A C A G T C A C G T A C G T A T C G A G T C A G T C C G T A C T A G G T A C A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCTTGCCAGC-
--CTGCCCGCA
 G T A C A G T C A C G T A C G T A T C G A G T C A G T C C G T A C T A G G T A C A C G T
A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTGCCAGC
BNTGDCCTTG-----
 A C G T A C G T A C G T A C G T A C G T G T A C A G T C A C G T A C G T A T C G A G T C A G T C C G T A C T A G G T A C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCTTGCCAGC--
-TTTCCCAGAAN
 G T A C A G T C A C G T A C G T A T C G A G T C A G T C C G T A C T A G G T A C A C G T A C G T
A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G