Information for 20-CTGGTTAATG (Motif 34)

A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C G T C G T A C G T A A G T C A G T C C G T A A C T G
p-value:1e-6
log p-value:-1.425e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 28.6bp
Average Position of motif in Background80.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----CTGGTTAATG--
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CTGGTTAATG-
-TGATTGATGA
 A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CTGGTTAATG-
---GKTAATGR
 A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTGGTTAATG---
-TGATTRATGGCY
 A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

HMBOX1/MA0895.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTGGTTAATG
ACTAGTTAAC-
 A C G T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C T G
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTGGTTAATG---
---GTTAATGGCC
 A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PH0073.1_Hoxc9/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTGGTTAATG------
NNAATTAATGACCNNN
 A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

NKX6-2/MA0675.1/Jaspar

Match Rank:8
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CTGGTTAATG--
----TTAATTAN
 A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

PH0168.1_Hnf1b/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CTGGTTAATG---
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

NKX6-1/MA0674.1/Jaspar

Match Rank:10
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CTGGTTAATG--
----TTAATTAN
 A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C