Information for 8-CTAGACAAGT (Motif 32)

A G T C A C G T T G C A A C T G C G T A A G T C C G T A C T G A A T C G C A G T
Reverse Opposite:
G T C A A T G C A G C T A C G T A C T G A C G T A G T C A C G T C G T A C T A G
p-value:1e-7
log p-value:-1.779e+01
Information Content per bp:1.864
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif41.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets36.1 +/- 19.8bp
Average Position of motif in Background46.3 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---CTAGACAAGT
CGTCTAGACA---
 A C G T A C G T A C G T A G T C A C G T T G C A A C T G C G T A A G T C C G T A C T G A A T C G C A G T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTAGACAAGT
BCAGACWA--
 A G T C A C G T T G C A A C T G C G T A A G T C C G T A C T G A A T C G C A G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CTAGACAAGT--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T T G C A A C T G C G T A A G T C C G T A C T G A A T C G C A G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTAGACAAGT
CCAGACAG--
 A G T C A C G T T G C A A C T G C G T A A G T C C G T A C T G A A T C G C A G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTAGACAAGT--
-AAGGCAAGTGT
 A G T C A C G T T G C A A C T G C G T A A G T C C G T A C T G A A T C G C A G T A C G T A C G T
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTAGACAAGT
-TTGACAGG-
 A G T C A C G T T G C A A C T G C G T A A G T C C G T A C T G A A T C G C A G T
A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTAGACAAGT
CCAGACRSVB
 A G T C A C G T T G C A A C T G C G T A A G T C C G T A C T G A A T C G C A G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTAGACAAGT
-TTGACAG--
 A G T C A C G T T G C A A C T G C G T A A G T C C G T A C T G A A T C G C A G T
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTAGACAAGT
--AGATAAGA
 A G T C A C G T T G C A A C T G C G T A A G T C C G T A C T G A A T C G C A G T
A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A

Hes2/MA0616.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTAGACAAGT--
TAACGACACGTGC
 A C G T A G T C A C G T T G C A A C T G C G T A A G T C C G T A C T G A A T C G C A G T A C G T A C G T
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C