Information for 12-GCCAGCCTTGTCA (Motif 25)

A T C G A G T C G A T C C G T A A C T G T A G C A G T C A G C T C G A T A T C G A G C T G A T C G T C A
Reverse Opposite:
C A G T C T A G T C G A T A G C C G T A T C G A T C A G A T C G T G A C C G A T C T A G T C A G T A G C
p-value:1e-10
log p-value:-2.507e+01
Information Content per bp:1.645
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.42%
Number of Background Sequences with motif304.1
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets45.3 +/- 25.1bp
Average Position of motif in Background49.2 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.63
Offset:7
Orientation:forward strand
Alignment:GCCAGCCTTGTCA--
-------YTGWCADY
 A T C G A G T C G A T C C G T A A C T G T A G C A G T C A G C T C G A T A T C G A G C T G A T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GCCAGCCTTGTCA-
------CCTGTCAA
 A T C G A G T C G A T C C G T A A C T G T A G C A G T C A G C T C G A T A T C G A G C T G A T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:GCCAGCCTTGTCA-
-------NTGTCAN
 A T C G A G T C G A T C C G T A A C T G T A G C A G T C A G C T C G A T A T C G A G C T G A T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GCCAGCCTTGTCA-
------CTTGGCAA
 A T C G A G T C G A T C C G T A A C T G T A G C A G T C A G C T C G A T A T C G A G C T G A T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.61
Offset:8
Orientation:forward strand
Alignment:GCCAGCCTTGTCA---
--------TGTCANYT
 A T C G A G T C G A T C C G T A A C T G T A G C A G T C A G C T C G A T A T C G A G C T G A T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GCCAGCCTTGTCA-
------GCTGTCAA
 A T C G A G T C G A T C C G T A A C T G T A G C A G T C A G C T C G A T A T C G A G C T G A T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCCAGCCTTGTCA
SCAGYCADGCATGAC-
 A C G T A C G T A C G T A T C G A G T C G A T C C G T A A C T G T A G C A G T C A G C T C G A T A T C G A G C T G A T C G T C A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:GCCAGCCTTGTCA---
------VBTGWCAGCB
 A T C G A G T C G A T C C G T A A C T G T A G C A G T C A G C T C G A T A T C G A G C T G A T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCCAGCCTTGTCA-
ACATGCCCGGGCAT
 A T C G A G T C G A T C C G T A A C T G T A G C A G T C A G C T C G A T A T C G A G C T G A T C G T C A A C G T
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GCCAGCCTTGTCA--
-----NNTTGGCANN
 A T C G A G T C G A T C C G T A A C T G T A G C A G T C A G C T C G A T A T C G A G C T G A T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C