Information for 16-AATATCAGCAGTCAGA (Motif 29)

G C T A C T G A A C G T C T G A C G A T A T G C G C T A T A C G A G T C C G T A A C T G C A G T A T G C C G T A A T C G C T G A
Reverse Opposite:
A G C T A T G C C G A T A T C G G T C A G T A C A C G T C T A G A T G C C G A T T A C G C G T A A G C T G T C A G A C T C G A T
p-value:1e-7
log p-value:-1.774e+01
Information Content per bp:1.784
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.2 +/- 25.6bp
Average Position of motif in Background30.8 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TGIF1/MA0796.1/Jaspar

Match Rank:1
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AATATCAGCAGTCAGA
--TGACAGCTGTCA--
 G C T A C T G A A C G T C T G A C G A T A T G C G C T A T A C G A G T C C G T A A C T G C A G T A T G C C G T A A T C G C T G A
A C G T A C G T G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AATATCAGCAGTCAGA
--TGACACCTGTCA--
 G C T A C T G A A C G T C T G A C G A T A T G C G C T A T A C G A G T C C G T A A C T G C A G T A T G C C G T A A T C G C T G A
A C G T A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AATATCAGCAGTCAGA
--TGACAGCTGTCA--
 G C T A C T G A A C G T C T G A C G A T A T G C G C T A T A C G A G T C C G T A A C T G C A G T A T G C C G T A A T C G C T G A
A C G T A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AATATCAGCAGTCAGA
--TGACACCTGTCA--
 G C T A C T G A A C G T C T G A C G A T A T G C G C T A T A C G A G T C C G T A A C T G C A G T A T G C C G T A A T C G C T G A
A C G T A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:5
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:AATATCAGCAGTCAGA
---GTCAGCANNTN--
 G C T A C T G A A C G T C T G A C G A T A T G C G C T A T A C G A G T C C G T A A C T G C A G T A T G C C G T A A T C G C T G A
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AATATCAGCAGTCAGA--
--AACGAGCTGTCAATAC
 G C T A C T G A A C G T C T G A C G A T A T G C G C T A T A C G A G T C C G T A A C T G C A G T A T G C C G T A A T C G C T G A A C G T A C G T
A C G T A C G T C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AATATCAGCAGTCAGA--
--AAAGACCTGTCAATCC
 G C T A C T G A A C G T C T G A C G A T A T G C G C T A T A C G A G T C C G T A A C T G C A G T A T G C C G T A A T C G C T G A A C G T A C G T
A C G T A C G T C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

PH0104.1_Meis2/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AATATCAGCAGTCAGA--
--AAAGACCTGTCAATAC
 G C T A C T G A A C G T C T G A C G A T A T G C G C T A T A C G A G T C C G T A A C T G C A G T A T G C C G T A A T C G C T G A A C G T A C G T
A C G T A C G T G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AATATCAGCAGTCAGA--
GAAGTANCACGAATNMRAGT
 A C G T A C G T G C T A C T G A A C G T C T G A C G A T A T G C G C T A T A C G A G T C C G T A A C T G C A G T A T G C C G T A A T C G C T G A A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AATATCAGCAGTCAGA
AAATCACAGCA------
 A C G T G C T A C T G A A C G T C T G A C G A T A T G C G C T A T A C G A G T C C G T A A C T G C A G T A T G C C G T A A T C G C T G A
T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T