Information for 5-TTGTWTGTTW (Motif 5)

G C A T A C G T A T C G A G C T C G A T A C G T A T C G A G C T A C G T G C T A
Reverse Opposite:
C G A T G T C A C T G A A T G C C G T A C G T A C T G A A T G C G T C A C G T A
p-value:1e-12
log p-value:-2.837e+01
Information Content per bp:1.744
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.47%
Number of Background Sequences with motif480.8
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets43.3 +/- 24.8bp
Average Position of motif in Background50.3 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxd3/MA0041.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TTGTWTGTTW
GAATGTTTGTTT
 A C G T A C G T G C A T A C G T A T C G A G C T C G A T A C G T A T C G A G C T A C G T G C T A
C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

MF0005.1_Forkhead_class/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TTGTWTGTTW
-TGTTTATTT
 G C A T A C G T A T C G A G C T C G A T A C G T A T C G A G C T A C G T G C T A
A C G T G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T

POL007.1_BREd/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TTGTWTGTTW
--GTTTGTT-
 G C A T A C G T A T C G A G C T C G A T A C G T A T C G A G C T A C G T G C T A
A C G T A C G T C T A G A C G T C A G T A C G T A C T G A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTGTWTGTTW-----
NNNNTTTGTTTACNNT
 A C G T G C A T A C G T A T C G A G C T C G A T A C G T A T C G A G C T A C G T G C T A A C G T A C G T A C G T A C G T A C G T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

Foxq1/MA0040.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TTGTWTGTTW
TATTGTTTATT-
 A C G T A C G T G C A T A C G T A T C G A G C T C G A T A C G T A T C G A G C T A C G T G C T A
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTGTWTGTTW-----
NCNTTTGTTATTTNN
 G C A T A C G T A T C G A G C T C G A T A C G T A T C G A G C T A C G T G C T A A C G T A C G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

SRY/MA0084.1/Jaspar

Match Rank:7
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TTGTWTGTTW--
---ATTGTTTAN
 G C A T A C G T A T C G A G C T C G A T A C G T A T C G A G C T A C G T G C T A A C G T A C G T
A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TTGTWTGTTW--
CCATTGTATGCAAAT
 A C G T A C G T A C G T G C A T A C G T A T C G A G C T C G A T A C G T A T C G A G C T A C G T G C T A A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TTGTWTGTTW
---ATTGTT-
 G C A T A C G T A T C G A G C T C G A T A C G T A T C G A G C T A C G T G C T A
A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTGTWTGTTW----
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T G C A T A C G T A T C G A G C T C G A T A C G T A T C G A G C T A C G T G C T A A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T