Information for 13-CAGAGAGAGGGAA (Motif 19)

A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G A C T G A T C G C T G A C G T A
Reverse Opposite:
A C G T A G C T A T G C G T A C A G T C A C G T A G T C C G A T A G T C A C G T A G T C A C G T A T C G
p-value:1e-8
log p-value:-2.035e+01
Information Content per bp:1.896
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.1 +/- 28.8bp
Average Position of motif in Background38.6 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F6/MA0471.1/Jaspar

Match Rank:1
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CAGAGAGAGGGAA--
----GGGCGGGAAGG
 A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G A C T G A T C G C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CAGAGAGAGGGAA
NNNACCGAGAGTNNN--
 A C G T A C G T A C G T A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G A C T G A T C G C T G A C G T A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CAGAGAGAGGGAA--
-----GGCGGGAARN
 A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G A C T G A T C G C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

Gata1/MA0035.3/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAGAGAGAGGGAA
-ANAGATAAGAA-
 A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G A C T G A T C G C T G A C G T A
A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CAGAGAGAGGGAA
AGAAAGTGAAAGTGA-
 A C G T A C G T A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G A C T G A T C G C T G A C G T A
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGAGAGGGAA
GAAAGTGAAAGT---
 A C G T A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G A C T G A T C G C T G A C G T A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T

IRF1/MA0050.2/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGAGAGGGAA-------
AAANNGAAAGTGAAAGTAAAN
 A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G A C T G A T C G C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CAGAGAGAGGGAA---
TGCGGAGTGGGACTGG
 A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G A C T G A T C G C T G A C G T A A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

RARA::RXRA/MA0159.1/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CAGAGAGAGGGAA
AGGTCACGGAGAGGTCA
 A C G T A C G T A C G T A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G A C T G A T C G C T G A C G T A
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

E2F4/MA0470.1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CAGAGAGAGGGAA--
----GGGCGGGAAGG
 A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G A C T G A T C G C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G