Information for 1-GAACAGAATGTTC (Motif 1)

C T A G T C G A C G T A A T G C C G T A T A C G T G C A C G T A G C A T T A C G G A C T A G C T G A T C
Reverse Opposite:
C T A G T C G A C T G A A T G C C G T A G C A T A C G T A T G C G C A T T A C G G C A T A G C T G A T C
p-value:1e-67
log p-value:-1.545e+02
Information Content per bp:1.571
Number of Target Sequences with motif195.0
Percentage of Target Sequences with motif24.19%
Number of Background Sequences with motif2641.5
Percentage of Background Sequences with motif5.60%
Average Position of motif in Targets51.5 +/- 25.3bp
Average Position of motif in Background50.2 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:GAACAGAATGTTC--
GVACAGNMTGTYCTB
 C T A G T C G A C G T A A T G C C G T A T A C G T G C A C G T A G C A T T A C G G A C T A G C T G A T C A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:GAACAGAATGTTC--
GRACAGWMTGTYCTB
 C T A G T C G A C G T A A T G C C G T A T A C G T G C A C G T A G C A T T A C G G A C T A G C T G A T C A C G T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-GAACAGAATGTTC--
AGNACANNNTGTNCTN
 A C G T C T A G T C G A C G T A A T G C C G T A T A C G T G C A C G T A G C A T T A C G G A C T A G C T G A T C A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:4
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GAACAGAATGTTC--
GAACADWATGTTCTT
 C T A G T C G A C G T A A T G C C G T A T A C G T G C A C G T A G C A T T A C G G A C T A G C T G A T C A C G T A C G T
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-GAACAGAATGTTC--
AGNACAGNCTGTTCTN
 A C G T C T A G T C G A C G T A A T G C C G T A T A C G T G C A C G T A G C A T T A C G G A C T A G C T G A T C A C G T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

NR3C2/MA0727.1/Jaspar

Match Rank:6
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GAACAGAATGTTC--
GGGAACACAATGTTCCC
 A C G T A C G T C T A G T C G A C G T A A T G C C G T A T A C G T G C A C G T A G C A T T A C G G A C T A G C T G A T C A C G T A C G T
C A T G C T A G C A T G C G T A T G C A A T G C C T G A G A T C C G T A C T G A G A C T A T C G G A C T G C A T G A T C A G T C G T A C

NR3C1/MA0113.3/Jaspar

Match Rank:7
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GAACAGAATGTTC--
GGGTACATAATGTTCCC
 A C G T A C G T C T A G T C G A C G T A A T G C C G T A T A C G T G C A C G T A G C A T T A C G G A C T A G C T G A T C A C G T A C G T
C T A G C T A G C T A G C G A T C G T A A T G C C T G A G A C T C G T A C T G A G A C T A T C G A C G T G C A T G A T C G A T C G T A C

Ar/MA0007.3/Jaspar

Match Rank:8
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GAACAGAATGTTC--
GGGAACACGGTGTACCC
 A C G T A C G T C T A G T C G A C G T A A T G C C G T A T A C G T G C A C G T A G C A T T A C G G A C T A G C T G A T C A C G T A C G T
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAACAGAATGTTC
-AACAGGAAGT--
 C T A G T C G A C G T A A T G C C G T A T A C G T G C A C G T A G C A T T A C G G A C T A G C T G A T C
A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAACAGAATGTTC
CCAGGAACAG-------
 A C G T A C G T A C G T A C G T C T A G T C G A C G T A A T G C C G T A T A C G T G C A C G T A G C A T T A C G G A C T A G C T G A T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T