Information for 5-CTGGTTCTCATATAAA (Motif 7)

A T G C A C G T A C T G A T C G C G A T A C G T T G A C A C G T A G T C C T G A A C G T C G T A C A G T C G T A C G T A C G T A
Reverse Opposite:
C G A T C G A T C G A T G C T A C G A T G T C A A G C T C T A G C G T A A C T G C G T A C G T A A T G C G T A C C G T A A T C G
p-value:1e-13
log p-value:-3.127e+01
Information Content per bp:1.737
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.8 +/- 27.6bp
Average Position of motif in Background45.6 +/- 6.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CTGGTTCTCATATAAA
------GTCGTAAAAT
 A T G C A C G T A C T G A T C G C G A T A C G T T G A C A C G T A G T C C T G A A C G T C G T A C A G T C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTGGTTCTCATATAAA--
--AAAGCTCGTAAAATTT
 A T G C A C G T A C T G A T C G C G A T A C G T T G A C A C G T A G T C C T G A A C G T C G T A C A G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PB0022.1_Gata5_1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTGGTTCTCATATAAA
NTNTTCTTATCAGTNTN-
 A C G T A C G T A T G C A C G T A C T G A T C G C G A T A C G T T G A C A C G T A G T C C T G A A C G T C G T A C A G T C G T A C G T A C G T A
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTGGTTCTCATATAAA
GTNTTGTTGTGANNT---
 A C G T A C G T A T G C A C G T A C T G A T C G C G A T A C G T T G A C A C G T A G T C C T G A A C G T C G T A C A G T C G T A C G T A C G T A
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T A C G T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CTGGTTCTCATATAAA
------GTCGTAAAAA
 A T G C A C G T A C T G A T C G C G A T A C G T T G A C A C G T A G T C C T G A A C G T C G T A C A G T C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CTGGTTCTCATATAAA
-----GCTCGTAAAAA
 A T G C A C G T A C T G A T C G C G A T A C G T T G A C A C G T A G T C C T G A A C G T C G T A C A G T C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTGGTTCTCATATAAA--
--AAACCTCGTAAAATTT
 A T G C A C G T A C T G A T C G C G A T A C G T T G A C A C G T A G T C C T G A A C G T C G T A C A G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0164.1_Six4/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CTGGTTCTCATATAAA
TNNNNGGTGTCATNTNT-
 A C G T A C G T A T G C A C G T A C T G A T C G C G A T A C G T T G A C A C G T A G T C C T G A A C G T C G T A C A G T C G T A C G T A C G T A
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTGGTTCTCATATAAA
--GGTTGCCATGGCAA
 A T G C A C G T A C T G A T C G C G A T A C G T T G A C A C G T A G T C C T G A A C G T C G T A C A G T C G T A C G T A C G T A
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Hoxa11/MA0911.1/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CTGGTTCTCATATAAA-
-----GGTCGTAAAATT
 A T G C A C G T A C T G A T C G C G A T A C G T T G A C A C G T A G T C C T G A A C G T C G T A C A G T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T