Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 785)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46653)	% of Background Sequences with Motif
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-75	-1.741e+02	0.0000	296.0	37.71%	5579.7	11.96%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-27	-6.384e+01	0.0000	61.0	7.77%	594.1	1.27%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-27	-6.258e+01	0.0000	58.0	7.39%	545.0	1.17%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-23	-5.364e+01	0.0000	51.0	6.50%	495.7	1.06%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-21	-4.893e+01	0.0000	317.0	40.38%	11562.4	24.78%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-20	-4.728e+01	0.0000	38.0	4.84%	298.1	0.64%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-16	-3.809e+01	0.0000	51.0	6.50%	719.4	1.54%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-14	-3.392e+01	0.0000	93.0	11.85%	2223.9	4.77%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-14	-3.391e+01	0.0000	83.0	10.57%	1855.0	3.97%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-14	-3.323e+01	0.0000	77.0	9.81%	1662.5	3.56%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-10	-2.330e+01	0.0000	75.0	9.55%	1961.9	4.20%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-9	-2.162e+01	0.0000	81.0	10.32%	2281.9	4.89%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-9	-2.076e+01	0.0000	65.0	8.28%	1680.7	3.60%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-8	-2.002e+01	0.0000	80.0	10.19%	2322.5	4.98%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-7	-1.695e+01	0.0000	53.0	6.75%	1378.1	2.95%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-6	-1.545e+01	0.0000	28.0	3.57%	529.8	1.14%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-6	-1.527e+01	0.0000	45.0	5.73%	1141.5	2.45%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-6	-1.509e+01	0.0000	60.0	7.64%	1751.3	3.75%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-5	-1.170e+01	0.0002	48.0	6.11%	1435.3	3.08%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-5	-1.167e+01	0.0002	9.0	1.15%	77.2	0.17%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-5	-1.163e+01	0.0002	10.0	1.27%	98.9	0.21%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-5	-1.160e+01	0.0002	220.0	28.03%	10027.9	21.49%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-4	-1.071e+01	0.0004	45.0	5.73%	1365.6	2.93%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-4	-1.050e+01	0.0004	41.0	5.22%	1209.5	2.59%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-4	-1.043e+01	0.0004	47.0	5.99%	1467.8	3.15%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-4	-1.000e+01	0.0006	59.0	7.52%	2028.7	4.35%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-4	-9.307e+00	0.0012	55.0	7.01%	1898.9	4.07%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-3	-8.852e+00	0.0019	41.0	5.22%	1306.7	2.80%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-8.222e+00	0.0034	64.0	8.15%	2408.1	5.16%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-3	-8.045e+00	0.0039	36.0	4.59%	1140.3	2.44%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-3	-7.290e+00	0.0080	113.0	14.39%	4974.3	10.66%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-3	-7.209e+00	0.0084	30.0	3.82%	933.2	2.00%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-7.029e+00	0.0098	27.0	3.44%	817.0	1.75%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-3	-6.909e+00	0.0107	38.0	4.84%	1306.7	2.80%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-2	-6.481e+00	0.0159	44.0	5.61%	1617.5	3.47%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-2	-6.124e+00	0.0221	25.0	3.18%	784.0	1.68%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-5.888e+00	0.0273	47.0	5.99%	1814.5	3.89%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-2	-5.666e+00	0.0332	50.0	6.37%	1982.0	4.25%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-5.602e+00	0.0344	14.0	1.78%	359.4	0.77%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-5.494e+00	0.0374	17.0	2.17%	483.7	1.04%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-5.488e+00	0.0374	32.0	4.08%	1141.7	2.45%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-5.127e+00	0.0503	9.0	1.15%	192.0	0.41%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-2	-5.127e+00	0.0503	9.0	1.15%	192.7	0.41%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-5.082e+00	0.0514	10.0	1.27%	229.1	0.49%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-2	-4.747e+00	0.0702	4.0	0.51%	47.6	0.10%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-4.742e+00	0.0702	8.0	1.02%	170.0	0.36%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-4.742e+00	0.0702	8.0	1.02%	170.0	0.36%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-4.449e+00	0.0887	40.0	5.10%	1621.2	3.47%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-4.409e+00	0.0904	14.0	1.78%	415.8	0.89%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-4.380e+00	0.0912	22.0	2.80%	768.3	1.65%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-4.363e+00	0.0912	5.0	0.64%	81.8	0.18%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-1	-4.356e+00	0.0912	28.0	3.57%	1049.0	2.25%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-4.338e+00	0.0912	16.0	2.04%	504.3	1.08%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.974e+00	0.1267	18.0	2.29%	616.2	1.32%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-3.929e+00	0.1301	41.0	5.22%	1731.4	3.71%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-3.788e+00	0.1471	13.0	1.66%	407.7	0.87%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.682e+00	0.1607	38.0	4.84%	1610.2	3.45%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.648e+00	0.1634	22.0	2.80%	827.1	1.77%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.613e+00	0.1664	57.0	7.26%	2600.1	5.57%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-3.537e+00	0.1765	41.0	5.22%	1781.2	3.82%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.479e+00	0.1840	74.0	9.43%	3527.9	7.56%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-3.398e+00	0.1963	26.0	3.31%	1044.6	2.24%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-3.343e+00	0.2041	33.0	4.20%	1399.0	3.00%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.322e+00	0.2051	19.0	2.42%	713.5	1.53%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-3.321e+00	0.2051	4.0	0.51%	73.2	0.16%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.316e+00	0.2051	21.0	2.68%	809.3	1.73%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.291e+00	0.2051	51.0	6.50%	2336.2	5.01%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-3.285e+00	0.2051	5.0	0.64%	108.6	0.23%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.277e+00	0.2051	83.0	10.57%	4054.9	8.69%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-3.258e+00	0.2051	69.0	8.79%	3300.8	7.07%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.241e+00	0.2051	51.0	6.50%	2344.3	5.02%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-3.132e+00	0.2206	91.0	11.59%	4523.5	9.69%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.123e+00	0.2206	7.0	0.89%	190.2	0.41%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.101e+00	0.2213	28.0	3.57%	1176.3	2.52%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.007e+00	0.2399	2.0	0.25%	21.4	0.05%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-2.937e+00	0.2539	22.0	2.80%	895.3	1.92%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-2.853e+00	0.2726	36.0	4.59%	1618.5	3.47%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-1	-2.821e+00	0.2778	43.0	5.48%	1990.4	4.26%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-2.797e+00	0.2812	73.0	9.30%	3611.3	7.74%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-2.747e+00	0.2918	3.0	0.38%	54.7	0.12%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.714e+00	0.2977	33.0	4.20%	1482.2	3.18%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-2.614e+00	0.3252	25.0	3.18%	1083.8	2.32%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-2.590e+00	0.3291	94.0	11.97%	4821.2	10.33%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.578e+00	0.3292	8.0	1.02%	260.4	0.56%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.546e+00	0.3358	26.0	3.31%	1143.7	2.45%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-1	-2.499e+00	0.3479	33.0	4.20%	1514.9	3.25%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-2.469e+00	0.3541	74.0	9.43%	3741.5	8.02%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.460e+00	0.3541	4.0	0.51%	98.2	0.21%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-2.398e+00	0.3716	8.0	1.02%	271.4	0.58%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.374e+00	0.3765	50.0	6.37%	2446.5	5.24%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-2.336e+00	0.3869	2.0	0.25%	31.1	0.07%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-2.319e+00	0.3891	20.0	2.55%	865.0	1.85%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.295e+00	0.3943	6.0	0.76%	188.8	0.40%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.263e+00	0.4028	72.0	9.17%	3681.5	7.89%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.258e+00	0.4028	10.0	1.27%	374.9	0.80%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.244e+00	0.4028	34.0	4.33%	1608.3	3.45%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-2.230e+00	0.4034	92.0	11.72%	4808.6	10.30%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.210e+00	0.4073	166.0	21.15%	9028.1	19.34%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.188e+00	0.4122	8.0	1.02%	286.0	0.61%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.183e+00	0.4122	2.0	0.25%	34.8	0.07%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.172e+00	0.4122	4.0	0.51%	109.1	0.23%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.152e+00	0.4147	12.0	1.53%	481.0	1.03%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.132e+00	0.4191	27.0	3.44%	1254.4	2.69%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.124e+00	0.4191	4.0	0.51%	111.2	0.24%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.116e+00	0.4191	46.0	5.86%	2281.4	4.89%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.107e+00	0.4191	28.0	3.57%	1311.7	2.81%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.097e+00	0.4191	24.0	3.06%	1101.8	2.36%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.083e+00	0.4199	35.0	4.46%	1690.1	3.62%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.076e+00	0.4199	10.0	1.27%	389.3	0.83%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.062e+00	0.4208	22.0	2.80%	1001.4	2.15%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.050e+00	0.4220	14.0	1.78%	590.1	1.26%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.014e+00	0.4337	62.0	7.90%	3188.7	6.83%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.995e+00	0.4380	14.0	1.78%	596.1	1.28%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.993e+00	0.4380	95.0	12.10%	5049.3	10.82%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.983e+00	0.4380	68.0	8.66%	3531.5	7.57%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.966e+00	0.4392	28.0	3.57%	1334.4	2.86%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.947e+00	0.4438	52.0	6.62%	2649.7	5.68%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.947e+00	0.4438	29.0	3.69%	1391.3	2.98%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.922e+00	0.4474	52.0	6.62%	2655.1	5.69%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.901e+00	0.4533	3.0	0.38%	79.7	0.17%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.872e+00	0.4629	20.0	2.55%	923.1	1.98%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.854e+00	0.4672	10.0	1.27%	409.5	0.88%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.838e+00	0.4710	73.0	9.30%	3853.3	8.26%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.837e+00	0.4710	17.0	2.17%	770.7	1.65%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.823e+00	0.4710	4.0	0.51%	125.2	0.27%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.789e+00	0.4829	151.0	19.24%	8332.1	17.85%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.775e+00	0.4858	5.0	0.64%	173.6	0.37%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.743e+00	0.4977	5.0	0.64%	175.3	0.38%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.729e+00	0.5005	30.0	3.82%	1485.4	3.18%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.728e+00	0.5005	8.0	1.02%	321.1	0.69%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.715e+00	0.5005	21.0	2.68%	1000.6	2.14%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.700e+00	0.5038	49.0	6.24%	2543.4	5.45%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.666e+00	0.5175	5.0	0.64%	180.5	0.39%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.663e+00	0.5175	92.0	11.72%	4989.0	10.69%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.625e+00	0.5310	13.0	1.66%	588.0	1.26%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.625e+00	0.5310	62.0	7.90%	3295.3	7.06%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.621e+00	0.5310	15.0	1.91%	695.0	1.49%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.615e+00	0.5310	47.0	5.99%	2453.8	5.26%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.563e+00	0.5485	5.0	0.64%	187.5	0.40%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.537e+00	0.5591	30.0	3.82%	1524.3	3.27%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.526e+00	0.5614	16.0	2.04%	761.7	1.63%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.525e+00	0.5614	12.0	1.53%	548.2	1.17%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.509e+00	0.5627	10.0	1.27%	445.8	0.96%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.493e+00	0.5681	3.0	0.38%	97.2	0.21%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.488e+00	0.5681	4.0	0.51%	144.5	0.31%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.481e+00	0.5681	30.0	3.82%	1536.0	3.29%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.466e+00	0.5714	10.0	1.27%	450.5	0.97%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.455e+00	0.5743	5.0	0.64%	195.4	0.42%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.435e+00	0.5817	16.0	2.04%	775.0	1.66%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.430e+00	0.5817	20.0	2.55%	994.3	2.13%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.422e+00	0.5817	35.0	4.46%	1829.2	3.92%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.397e+00	0.5925	12.0	1.53%	565.8	1.21%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.393e+00	0.5925	35.0	4.46%	1836.9	3.94%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.391e+00	0.5925	5.0	0.64%	200.4	0.43%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.389e+00	0.5925	15.0	1.91%	728.6	1.56%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.383e+00	0.5925	4.0	0.51%	151.4	0.32%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.383e+00	0.5925	65.0	8.28%	3543.7	7.59%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.382e+00	0.5925	12.0	1.53%	567.1	1.22%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.331e+00	0.6051	39.0	4.97%	2078.7	4.45%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.330e+00	0.6051	17.0	2.17%	847.2	1.82%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.325e+00	0.6051	54.0	6.88%	2933.3	6.29%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.318e+00	0.6051	9.0	1.15%	415.2	0.89%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.300e+00	0.6083	27.0	3.44%	1409.3	3.02%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.276e+00	0.6196	18.0	2.29%	912.5	1.96%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.231e+00	0.6444	17.0	2.17%	865.4	1.85%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.201e+00	0.6599	14.0	1.78%	704.7	1.51%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.199e+00	0.6599	8.0	1.02%	376.4	0.81%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.155e+00	0.6828	20.0	2.55%	1048.8	2.25%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.151e+00	0.6828	7.0	0.89%	328.8	0.70%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.132e+00	0.6902	17.0	2.17%	884.0	1.89%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.116e+00	0.6976	69.0	8.79%	3874.0	8.30%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.114e+00	0.6976	33.0	4.20%	1797.8	3.85%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.108e+00	0.6976	28.0	3.57%	1513.8	3.24%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.108e+00	0.6976	26.0	3.31%	1399.9	3.00%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.073e+00	0.7114	3.0	0.38%	123.8	0.27%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.067e+00	0.7114	4.0	0.51%	177.0	0.38%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.060e+00	0.7127	3.0	0.38%	124.2	0.27%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.050e+00	0.7158	13.0	1.66%	675.1	1.45%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.023e+00	0.7310	22.0	2.80%	1192.0	2.55%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.020e+00	0.7310	14.0	1.78%	737.6	1.58%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.016e+00	0.7310	39.0	4.97%	2173.9	4.66%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.003e+00	0.7335	22.0	2.80%	1197.8	2.57%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.003e+00	0.7335	28.0	3.57%	1542.7	3.31%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.002e+00	0.7335	11.0	1.40%	571.5	1.22%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-9.861e-01	0.7340	9.0	1.15%	461.5	0.99%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-9.790e-01	0.7352	1.0	0.13%	28.5	0.06%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-9.783e-01	0.7352	25.0	3.18%	1376.7	2.95%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.722e-01	0.7352	8.0	1.02%	407.7	0.87%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-9.611e-01	0.7366	12.0	1.53%	635.3	1.36%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-9.585e-01	0.7366	2.0	0.25%	79.8	0.17%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-9.561e-01	0.7366	20.0	2.55%	1094.8	2.35%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.438e-01	0.7378	4.0	0.51%	188.3	0.40%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-9.331e-01	0.7418	8.0	1.02%	413.9	0.89%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-9.302e-01	0.7418	7.0	0.89%	357.3	0.77%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-9.023e-01	0.7572	73.0	9.30%	4204.9	9.01%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-8.991e-01	0.7572	2.0	0.25%	83.2	0.18%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-8.918e-01	0.7574	6.0	0.76%	306.4	0.66%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-8.860e-01	0.7580	66.0	8.41%	3801.8	8.15%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-8.804e-01	0.7584	15.0	1.91%	824.5	1.77%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-8.788e-01	0.7584	49.0	6.24%	2807.2	6.02%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.649e-01	0.7626	5.0	0.64%	253.9	0.54%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-8.521e-01	0.7686	4.0	0.51%	198.4	0.43%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.510e-01	0.7686	56.0	7.13%	3230.7	6.92%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-8.394e-01	0.7708	17.0	2.17%	950.0	2.04%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.260e-01	0.7774	7.0	0.89%	373.2	0.80%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-8.206e-01	0.7778	76.0	9.68%	4423.2	9.48%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-8.195e-01	0.7778	5.0	0.64%	259.8	0.56%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-8.147e-01	0.7778	16.0	2.04%	898.9	1.93%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-8.016e-01	0.7813	8.0	1.02%	435.7	0.93%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.904e-01	0.7864	3.0	0.38%	148.1	0.32%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.818e-01	0.7894	26.0	3.31%	1494.8	3.20%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.777e-01	0.7894	78.0	9.94%	4565.9	9.78%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-7.640e-01	0.7960	13.0	1.66%	735.2	1.58%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.601e-01	0.7960	18.0	2.29%	1030.1	2.21%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-7.499e-01	0.7998	1.0	0.13%	38.2	0.08%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.413e-01	0.8029	136.0	17.32%	8025.2	17.20%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.338e-01	0.8053	6.0	0.76%	330.0	0.71%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-7.321e-01	0.8053	16.0	2.04%	920.9	1.97%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-7.288e-01	0.8053	76.0	9.68%	4475.9	9.59%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-7.283e-01	0.8053	23.0	2.93%	1335.7	2.86%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.207e-01	0.8053	51.0	6.50%	2997.0	6.42%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-7.159e-01	0.8053	5.0	0.64%	274.8	0.59%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.092e-01	0.8053	82.0	10.45%	4843.2	10.38%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-6.904e-01	0.8148	2.0	0.25%	100.2	0.21%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.679e-01	0.8296	8.0	1.02%	461.8	0.99%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.589e-01	0.8334	17.0	2.17%	1002.0	2.15%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.490e-01	0.8380	10.0	1.27%	585.9	1.26%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-6.412e-01	0.8408	39.0	4.97%	2322.0	4.98%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-6.400e-01	0.8408	2.0	0.25%	105.2	0.23%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.364e-01	0.8408	75.0	9.55%	4473.7	9.59%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-6.296e-01	0.8408	7.0	0.89%	409.3	0.88%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-6.083e-01	0.8540	65.0	8.28%	3894.2	8.34%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.042e-01	0.8540	18.0	2.29%	1079.4	2.31%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.027e-01	0.8540	2.0	0.25%	109.9	0.24%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-5.977e-01	0.8540	21.0	2.68%	1262.4	2.71%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.922e-01	0.8540	11.0	1.40%	660.1	1.41%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-5.842e-01	0.8563	18.0	2.29%	1086.7	2.33%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.703e-01	0.8647	12.0	1.53%	727.6	1.56%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.654e-01	0.8653	5.0	0.64%	300.9	0.64%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-5.597e-01	0.8666	31.0	3.95%	1881.8	4.03%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-5.563e-01	0.8666	74.0	9.43%	4468.5	9.57%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-5.539e-01	0.8666	55.0	7.01%	3329.9	7.14%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.436e-01	0.8698	237.0	30.19%	14220.5	30.47%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.360e-01	0.8728	6.0	0.76%	368.7	0.79%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.162e-01	0.8866	43.0	5.48%	2629.4	5.63%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-5.028e-01	0.8949	28.0	3.57%	1727.4	3.70%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-4.966e-01	0.8969	34.0	4.33%	2095.0	4.49%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.958e-01	0.8969	3.0	0.38%	187.8	0.40%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.917e-01	0.8969	40.0	5.10%	2462.9	5.28%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-4.843e-01	0.8970	95.0	12.10%	5787.0	12.40%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.843e-01	0.8970	7.0	0.89%	443.4	0.95%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.782e-01	0.8970	76.0	9.68%	4648.1	9.96%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-4.730e-01	0.8970	7.0	0.89%	446.1	0.96%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-4.707e-01	0.8970	4.0	0.51%	256.5	0.55%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.551e-01	0.9056	13.0	1.66%	827.9	1.77%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-4.423e-01	0.9137	2.0	0.25%	130.1	0.28%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.388e-01	0.9137	19.0	2.42%	1206.1	2.58%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.379e-01	0.9137	4.0	0.51%	263.3	0.56%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.356e-01	0.9137	47.0	5.99%	2924.5	6.27%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-4.306e-01	0.9137	11.0	1.40%	711.4	1.52%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.302e-01	0.9137	32.0	4.08%	2011.9	4.31%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.032e-01	0.9284	4.0	0.51%	271.3	0.58%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-3.949e-01	0.9325	4.0	0.51%	273.2	0.59%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-3.881e-01	0.9353	23.0	2.93%	1481.0	3.17%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.865e-01	0.9353	20.0	2.55%	1294.0	2.77%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.828e-01	0.9353	31.0	3.95%	1979.8	4.24%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.718e-01	0.9400	2.0	0.25%	142.5	0.31%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-3.700e-01	0.9400	7.0	0.89%	477.8	1.02%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.627e-01	0.9415	6.0	0.76%	414.6	0.89%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-3.598e-01	0.9415	3.0	0.38%	214.2	0.46%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.589e-01	0.9415	105.0	13.38%	6518.8	13.97%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.526e-01	0.9415	7.0	0.89%	483.6	1.04%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-3.403e-01	0.9487	9.0	1.15%	618.5	1.33%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.354e-01	0.9499	13.0	1.66%	878.4	1.88%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.306e-01	0.9510	9.0	1.15%	622.8	1.33%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.266e-01	0.9513	53.0	6.75%	3380.8	7.24%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-3.118e-01	0.9621	50.0	6.37%	3209.9	6.88%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-3.102e-01	0.9621	8.0	1.02%	565.9	1.21%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.046e-01	0.9621	3.0	0.38%	228.3	0.49%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-3.044e-01	0.9621	39.0	4.97%	2534.2	5.43%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.953e-01	0.9641	1.0	0.13%	81.1	0.17%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.870e-01	0.9654	3.0	0.38%	233.7	0.50%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.870e-01	0.9654	3.0	0.38%	233.2	0.50%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.843e-01	0.9654	73.0	9.30%	4655.4	9.98%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.828e-01	0.9654	26.0	3.31%	1737.4	3.72%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.768e-01	0.9654	4.0	0.51%	307.6	0.66%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.757e-01	0.9654	10.0	1.27%	713.3	1.53%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.710e-01	0.9654	69.0	8.79%	4425.8	9.48%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.503e-01	0.9806	62.0	7.90%	4018.3	8.61%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.491e-01	0.9806	4.0	0.51%	317.8	0.68%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.463e-01	0.9806	28.0	3.57%	1894.5	4.06%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.341e-01	0.9864	20.0	2.55%	1392.2	2.98%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.201e-01	0.9969	120.0	15.29%	7630.0	16.35%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.173e-01	0.9969	1.0	0.13%	97.5	0.21%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.146e-01	0.9969	4.0	0.51%	331.5	0.71%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.062e-01	1.0000	44.0	5.61%	2949.1	6.32%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.963e-01	1.0000	48.0	6.11%	3214.9	6.89%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.953e-01	1.0000	131.0	16.69%	8350.8	17.89%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.931e-01	1.0000	2.0	0.25%	188.7	0.40%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.877e-01	1.0000	2.0	0.25%	190.3	0.41%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.870e-01	1.0000	81.0	10.32%	5289.6	11.33%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.833e-01	1.0000	20.0	2.55%	1437.3	3.08%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.825e-01	1.0000	10.0	1.27%	770.1	1.65%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.786e-01	1.0000	142.0	18.09%	9059.0	19.41%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.661e-01	1.0000	30.0	3.82%	2107.4	4.52%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.653e-01	1.0000	16.0	2.04%	1191.0	2.55%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.612e-01	1.0000	3.0	0.38%	281.9	0.60%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.496e-01	1.0000	7.0	0.89%	585.9	1.26%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.474e-01	1.0000	1.0	0.13%	118.5	0.25%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.439e-01	1.0000	12.0	1.53%	940.6	2.02%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.426e-01	1.0000	17.0	2.17%	1281.2	2.75%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.412e-01	1.0000	6.0	0.76%	519.6	1.11%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.266e-01	1.0000	35.0	4.46%	2490.0	5.34%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.207e-01	1.0000	13.0	1.66%	1035.0	2.22%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.202e-01	1.0000	9.0	1.15%	754.8	1.62%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.170e-01	1.0000	30.0	3.82%	2179.2	4.67%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.146e-01	1.0000	1.0	0.13%	132.3	0.28%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.109e-01	1.0000	5.0	0.64%	469.8	1.01%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.104e-01	1.0000	18.0	2.29%	1390.8	2.98%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.092e-01	1.0000	4.0	0.51%	393.4	0.84%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.881e-02	1.0000	4.0	0.51%	402.6	0.86%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.219e-02	1.0000	5.0	0.64%	498.6	1.07%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-8.183e-02	1.0000	25.0	3.18%	1914.5	4.10%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.991e-02	1.0000	68.0	8.66%	4721.2	10.12%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-7.490e-02	1.0000	63.0	8.03%	4418.9	9.47%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.850e-02	1.0000	6.0	0.76%	594.7	1.27%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.669e-02	1.0000	2.0	0.25%	263.6	0.56%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.639e-02	1.0000	30.0	3.82%	2288.1	4.90%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.611e-02	1.0000	140.0	17.83%	9298.5	19.92%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.314e-02	1.0000	5.0	0.64%	523.5	1.12%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-6.183e-02	1.0000	1.0	0.13%	167.2	0.36%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.785e-02	1.0000	63.0	8.03%	4482.9	9.61%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.521e-02	1.0000	10.0	1.27%	921.9	1.98%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-5.475e-02	1.0000	1.0	0.13%	174.5	0.37%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.280e-02	1.0000	59.0	7.52%	4245.0	9.10%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-5.207e-02	1.0000	5.0	0.64%	541.4	1.16%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.730e-02	1.0000	2.0	0.25%	287.8	0.62%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.336e-02	1.0000	17.0	2.17%	1461.1	3.13%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-4.041e-02	1.0000	13.0	1.66%	1181.1	2.53%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.222e-02	1.0000	57.0	7.26%	4304.4	9.22%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.163e-02	1.0000	1.0	0.13%	228.4	0.49%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.050e-02	1.0000	8.0	1.02%	875.6	1.88%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.416e-02	1.0000	22.0	2.80%	1978.4	4.24%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.237e-03	1.0000	2.0	0.25%	437.9	0.94%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.770e-03	1.0000	11.0	1.40%	1367.7	2.93%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.000e-06	1.0000	26.0	3.31%	3266.1	7.00%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	70.4	0.15%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	27.9	0.06%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	17.2	0.04%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	92.3	0.20%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	75.8	0.16%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	22.0	0.05%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	7.0	0.01%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	101.7	0.22%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	27.3	0.06%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	16.1	0.03%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	10.2	0.02%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	0.000e+00	1.0000	0.0	0.00%	187.7	0.40%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	17.7	0.04%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	45.2	0.10%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.3	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	10.1	0.02%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	7.4	0.02%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	0.000e+00	1.0000	0.0	0.00%	114.2	0.24%