Information for 10-CCTTGGCAAG (Motif 12)

A G T C A G T C A G C T G C A T C T A G T A C G A G T C C G T A T G C A T C A G
Reverse Opposite:
A G T C A C G T G C A T T C A G A T G C A G T C C G T A T C G A C T A G T C A G
p-value:1e-8
log p-value:-2.057e+01
Information Content per bp:1.733
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.69%
Number of Background Sequences with motif441.4
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets56.0 +/- 26.5bp
Average Position of motif in Background51.9 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:CCTTGGCAAG
-CTTGGCAA-
 A G T C A G T C A G C T G C A T C T A G T A C G A G T C C G T A T G C A T C A G
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CCTTGGCAAG
NNTTGGCANN
 A G T C A G T C A G C T G C A T C T A G T A C G A G T C C G T A T G C A T C A G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CCTTGGCAAG
-NTTGGCANN
 A G T C A G T C A G C T G C A T C T A G T A C G A G T C C G T A T G C A T C A G
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CCTTGGCAAG
--TTGGCA--
 A G T C A G T C A G C T G C A T C T A G T A C G A G T C C G T A T G C A T C A G
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCTTGGCAAG
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A G T C A G T C A G C T G C A T C T A G T A C G A G T C C G T A T G C A T C A G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCTTGGCAAG---
TACCATAGCAACGGT
 A C G T A C G T A G T C A G T C A G C T G C A T C T A G T A C G A G T C C G T A T G C A T C A G A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCTTGGCAAG
WDNCTGGGCA--
 A C G T A C G T A G T C A G T C A G C T G C A T C T A G T A C G A G T C C G T A T G C A T C A G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CCTTGGCAAG-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T G C A T C T A G T A C G A G T C C G T A T G C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTTGGCAAG--
SCCTAGCAACAG
 A G T C A G T C A G C T G C A T C T A G T A C G A G T C C G T A T G C A T C A G A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCTTGGCAAG---
--AAGGCAAGTGT
 A G T C A G T C A G C T G C A T C T A G T A C G A G T C C G T A T G C A T C A G A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T