Information for 3-CAGAACAAAC (Motif 3)

G T A C C G T A T A C G C T G A C T G A G T A C C G T A C G T A T G C A A G T C
Reverse Opposite:
T C A G A C G T A C G T A C G T A C T G A G C T G A C T A T G C A C G T C A T G
p-value:1e-19
log p-value:-4.452e+01
Information Content per bp:1.840
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.58%
Number of Background Sequences with motif152.3
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets43.2 +/- 27.5bp
Average Position of motif in Background47.9 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0071.1_Sox4_1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CAGAACAAAC-----
AGAAGAACAAAGGACTA
 A C G T A C G T G T A C C G T A T A C G C T G A C T G A G T A C C G T A C G T A T G C A A G T C A C G T A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CAGAACAAAC-----
ATAAGAACAAAGGACTA
 A C G T A C G T G T A C C G T A T A C G C T G A C T G A G T A C C G T A C G T A T G C A A G T C A C G T A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CAGAACAAAC
---AACAAT-
 G T A C C G T A T A C G C T G A C T G A G T A C C G T A C G T A T G C A A G T C
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CAGAACAAAC-
-AAAACAAAGG
 G T A C C G T A T A C G C T G A C T G A G T A C C G T A C G T A T G C A A G T C A C G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CAGAACAAAC--
AAAAATAACAAACGG
 A C G T A C G T A C G T G T A C C G T A T A C G C T G A C T G A G T A C C G T A C G T A T G C A A G T C A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CAGAACAAAC-
-RNAACAATGG
 G T A C C G T A T A C G C T G A C T G A G T A C C G T A C G T A T G C A A G T C A C G T
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAGAACAAAC-
-GGAACAAAGR
 G T A C C G T A T A C G C T G A C T G A G T A C C G T A C G T A T G C A A G T C A C G T
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CAGAACAAAC--
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A T A C G C T G A C T G A G T A C C G T A C G T A T G C A A G T C A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0120.1_Foxj1_2/Jaspar

Match Rank:9
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CAGAACAAAC-
ATGTCACAACAACAC
 A C G T A C G T A C G T A C G T G T A C C G T A T A C G C T G A C T G A G T A C C G T A C G T A T G C A A G T C A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CAGAACAAAC-
NTTNAGAACAATTA
 A C G T A C G T A C G T G T A C C G T A T A C G C T G A C T G A G T A C C G T A C G T A T G C A A G T C A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A