Information for 19-AGTAGGCCAG (Motif 41)

C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C A G T C C G A T C G T A A G T C A C G T
p-value:1e-5
log p-value:-1.216e+01
Information Content per bp:1.959
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.7 +/- 11.1bp
Average Position of motif in Background66.8 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGTAGGCCAG
AAYTAGGTCA-
 A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGTAGGCCAG
TATAAGTAGGTCAA
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGTAGGCCAG
-CTAGGCCT-
 C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G
A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGTAGGCCAG-
---AGGCCTNG
 C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGTAGGCCAG---
--AAGGCAAGTGT
 C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGTAGGCCAG---
---ATGCCAGACN
 C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGTAGGCCAG
----TGCCAA
 C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGTAGGCCAG---
---TGCCCAGNHW
 C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGTAGGCCAG-
--CGTGCCAAG
 C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

PB0094.1_Zfp128_1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGTAGGCCAG---
TTNGGGTACGCCNNANN
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A