Information for 11-GTCAAGGCAA (Motif 35)

A C T G A C G T A G T C C G T A C G T A A C T G A C T G A G T C C T G A C G T A
Reverse Opposite:
A C G T A G C T A C T G A G T C A G T C A C G T A C G T A C T G C G T A A G T C
p-value:1e-7
log p-value:-1.700e+01
Information Content per bp:1.957
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets75.2 +/- 12.9bp
Average Position of motif in Background62.0 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GTCAAGGCAA
AGGTCAAGGTCA
 A C G T A C G T A C T G A C G T A G T C C G T A C G T A A C T G A C T G A G T C C T G A C G T A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GTCAAGGCAA
NTCAAGGTCA
 A C T G A C G T A G T C C G T A C G T A A C T G A C T G A G T C C T G A C G T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GTCAAGGCAA
BTCAAGGTCA
 A C T G A C G T A G T C C G T A C G T A A C T G A C T G A G T C C T G A C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GTCAAGGCAA
AGGTCAAGGTCA
 A C G T A C G T A C T G A C G T A G T C C G T A C G T A A C T G A C T G A G T C C T G A C G T A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GTCAAGGCAA--
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T A C T G A C G T A G T C C G T A C G T A A C T G A C T G A G T C C T G A C G T A A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GTCAAGGCAA--
--CAAGGHCANV
 A C T G A C G T A G T C C G T A C G T A A C T G A C T G A G T C C T G A C G T A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GTCAAGGCAA----
---AAGGCAAGTGT
 A C T G A C G T A G T C C G T A C G T A A C T G A C T G A G T C C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

ESRRB/MA0141.3/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GTCAAGGCAA--
-TCAAGGTCATA
 A C T G A C G T A G T C C G T A C G T A A C T G A C T G A G T C C T G A C G T A A C G T A C G T
A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

Esrra/MA0592.2/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTCAAGGCAA-
TTCAAGGTCAT
 A C T G A C G T A G T C C G T A C G T A A C T G A C T G A G T C C T G A C G T A A C G T
A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

SMAD3/MA0795.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTCAAGGCAA
CGTCTAGACA-
 A C G T A C T G A C G T A G T C C G T A C G T A A C T G A C T G A G T C C T G A C G T A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T