Information for 3-TGAGCACCATGCCMAG (Motif 4)

C G A T A C T G C T G A C T A G A G T C C G T A T G A C A G T C C G T A C G A T A C T G A G T C A G T C G T A C C G T A A C T G
Reverse Opposite:
G T A C C G A T A C T G C T A G A C T G A G T C C G T A G C A T A C T G A C T G A C G T A C T G A G T C G A C T A G T C C G T A
p-value:1e-14
log p-value:-3.230e+01
Information Content per bp:1.819
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.1 +/- 30.7bp
Average Position of motif in Background43.3 +/- 8.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TGAGCACCATGCCMAG
-TGGCACCATGCCAA-
 C G A T A C T G C T G A C T A G A G T C C G T A T G A C A G T C C G T A C G A T A C T G A G T C A G T C G T A C C G T A A C T G
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGAGCACCATGCCMAG----
TCAGCACCATGGACAGCTCC
 C G A T A C T G C T G A C T A G A G T C C G T A T G A C A G T C C G T A C G A T A C T G A G T C A G T C G T A C C G T A A C T G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

REST/MA0138.2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGAGCACCATGCCMAG----
TTCAGCACCATGGACAGCGCC
 A C G T C G A T A C T G C T G A C T A G A G T C C G T A T G A C A G T C C G T A C G A T A C T G A G T C A G T C G T A C C G T A A C T G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGAGCACCATGCCMAG
TTGGCANNNTGCCAAG
 C G A T A C T G C T G A C T A G A G T C C G T A T G A C A G T C C G T A C G A T A C T G A G T C A G T C G T A C C G T A A C T G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.58
Offset:9
Orientation:reverse strand
Alignment:TGAGCACCATGCCMAG---
---------TGCCCAGNHW
 C G A T A C T G C T G A C T A G A G T C C G T A T G A C A G T C C G T A C G A T A C T G A G T C A G T C G T A C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.54
Offset:8
Orientation:forward strand
Alignment:TGAGCACCATGCCMAG-
--------ATGCCCACC
 C G A T A C T G C T G A C T A G A G T C C G T A T G A C A G T C C G T A C G A T A C T G A G T C A G T C G T A C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

ESR2/MA0258.2/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TGAGCACCATGCCMAG
AGGTCACCCTGACCT-
 C G A T A C T G C T G A C T A G A G T C C G T A T G A C A G T C C G T A C G A T A C T G A G T C A G T C G T A C C G T A A C T G
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGAGCACCATGCCMAG
NAGGTCACNNTGACC--
 A C G T C G A T A C T G C T G A C T A G A G T C C G T A T G A C A G T C C G T A C G A T A C T G A G T C A G T C G T A C C G T A A C T G
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:TGAGCACCATGCCMAG----
------ACATGCCCGGGCAT
 C G A T A C T G C T G A C T A G A G T C C G T A T G A C A G T C C G T A C G A T A C T G A G T C A G T C G T A C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.53
Offset:7
Orientation:forward strand
Alignment:TGAGCACCATGCCMAG-
-------GGTGCCAAGT
 C G A T A C T G C T G A C T A G A G T C C G T A T G A C A G T C C G T A C G A T A C T G A G T C A G T C G T A C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T