Information for 3-TCACGCATGC (Motif 2)

C A G T T A G C G C T A A T G C T C A G G A T C T G C A A G C T C A T G G T A C
Reverse Opposite:
C A T G G T A C T C G A A C G T C T A G A G T C T A C G C G A T A T C G G T C A
p-value:1e-14
log p-value:-3.315e+01
Information Content per bp:1.657
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif9.59%
Number of Background Sequences with motif1521.2
Percentage of Background Sequences with motif3.37%
Average Position of motif in Targets53.7 +/- 24.6bp
Average Position of motif in Background49.2 +/- 38.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TCACGCATGC
-CACGCA---
 C A G T T A G C G C T A A T G C T C A G G A T C T G C A A G C T C A T G G T A C
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TCACGCATGC
TBGCACGCAA--
 A C G T A C G T C A G T T A G C G C T A A T G C T C A G G A T C T G C A A G C T C A T G G T A C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TCACGCATGC---
TTCACGCATGAGTT
 A C G T C A G T T A G C G C T A A T G C T C A G G A T C T G C A A G C T C A T G G T A C A C G T A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PAX1/MA0779.1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TCACGCATGC-----
CGTCACGCATGACTGCA
 A C G T A C G T C A G T T A G C G C T A A T G C T C A G G A T C T G C A A G C T C A T G G T A C A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCACGCATGC-----
CGTCACGCATGACTGCA
 A C G T A C G T C A G T T A G C G C T A A T G C T C A G G A T C T G C A A G C T C A T G G T A C A C G T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

NRF(NRF)/Promoter/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCACGCATGC--
GTGCGCATGCGC
 C A G T T A G C G C T A A T G C T C A G G A T C T G C A A G C T C A T G G T A C A C G T A C G T
A T C G A G C T A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C

Pax2/MA0067.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCACGCATGC
AGTCACGC----
 A C G T A C G T C A G T T A G C G C T A A T G C T C A G G A T C T G C A A G C T C A T G G T A C
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCACGCATGC
GCACGTAY--
 C A G T T A G C G C T A A T G C T C A G G A T C T G C A A G C T C A T G G T A C
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCACGCATGC
GCACGTACCC
 C A G T T A G C G C T A A T G C T C A G G A T C T G C A A G C T C A T G G T A C
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TCACGCATGC----
--GCGCATGCGCAG
 C A G T T A G C G C T A A T G C T C A G G A T C T G C A A G C T C A T G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T G A C C T A G T A G C T G C A A C G T T A C G A G T C A C T G A G T C T C G A T A C G