Information for 7-AAGGCTGGTTGGA (Motif 13)

C G T A C G T A A C T G A T C G G A T C A C G T A C T G A C T G A G C T A C G T A C T G A C T G C T G A
Reverse Opposite:
G A C T A G T C A G T C C G T A C T G A A G T C A G T C C G T A C A T G A T G C A G T C A C G T A C G T
p-value:1e-10
log p-value:-2.385e+01
Information Content per bp:1.929
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.9 +/- 9.1bp
Average Position of motif in Background42.7 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AAGGCTGGTTGGA
GTCATGCHTGRCTGS-
 A C G T A C G T A C G T C G T A C G T A A C T G A T C G G A T C A C G T A C T G A C T G A G C T A C G T A C T G A C T G C T G A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

NFYA/MA0060.2/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAGGCTGGTTGGA---
AGAGTGCTGATTGGTCCA
 A C G T A C G T C G T A C G T A A C T G A T C G G A T C A C G T A C T G A C T G A G C T A C G T A C T G A C T G C T G A A C G T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AAGGCTGGTTGGA------
----CTGATTGGTCNATTT
 C G T A C G T A A C T G A T C G G A T C A C G T A C T G A C T G A G C T A C G T A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AAGGCTGGTTGGA---
-RGSMTBCTGGGAAAT
 C G T A C G T A A C T G A T C G G A T C A C G T A C T G A C T G A G C T A C G T A C T G A C T G C T G A A C G T A C G T A C G T
A C G T C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAGGCTGGTTGGA
TWGTCTGV-----
 C G T A C G T A A C T G A T C G G A T C A C G T A C T G A C T G A G C T A C G T A C T G A C T G C T G A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AAGGCTGGTTGGA-----
--NGTAGGTTGGCATNNN
 C G T A C G T A A C T G A T C G G A T C A C G T A C T G A C T G A G C T A C G T A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AAGGCTGGTTGGA
AAGGCAAGTGT--
 C G T A C G T A A C T G A T C G G A T C A C G T A C T G A C T G A G C T A C G T A C T G A C T G C T G A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:AAGGCTGGTTGGA
--NGCTN------
 C G T A C G T A A C T G A T C G G A T C A C G T A C T G A C T G A G C T A C G T A C T G A C T G C T G A
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:AAGGCTGGTTGGA
----TTGATTGN-
 C G T A C G T A A C T G A T C G G A T C A C G T A C T G A C T G A G C T A C G T A C T G A C T G C T G A
A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----AAGGCTGGTTGGA
NGTCACGCTTGGCTGC-
 A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T C G G A T C A C G T A C T G A C T G A G C T A C G T A C T G A C T G C T G A
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T