Information for 5-GAGACAYARACTGCTT (Motif 4)

A C T G C T G A A C T G T C G A G T A C G T C A A G C T C T G A T C A G G T C A A G T C C G A T C A T G A G T C G C A T A C G T
Reverse Opposite:
C G T A C G T A C T A G G T A C C G T A C T A G A C G T A G T C A G C T T C G A A C G T A C T G A C G T A G T C G A C T G T A C
p-value:1e-16
log p-value:-3.730e+01
Information Content per bp:1.727
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.4 +/- 13.5bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GAGACAYARACTGCTT
-GVACAGNMTGTYCTB
 A C T G C T G A A C T G T C G A G T A C G T C A A G C T C T G A T C A G G T C A A G T C C G A T C A T G A G T C G C A T A C G T
A C G T C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:2
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GAGACAYARACTGCTT
-GGCCACACCCAN---
 A C T G C T G A A C T G T C G A G T A C G T C A A G C T C T G A T C A G G T C A A G T C C G A T C A T G A G T C G C A T A C G T
A C G T C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GAGACAYARACTGCTT
TTGACAG---------
 A C T G C T G A A C T G T C G A G T A C G T C A A G C T C T G A T C A G G T C A A G T C C G A T C A T G A G T C G C A T A C G T
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:GAGACAYARACTGCTT
---ACAAAGGNBCCT-
 A C T G C T G A A C T G T C G A G T A C G T C A A G C T C T G A T C A G G T C A A G T C C G A T C A T G A G T C G C A T A C G T
A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GAGACAYARACTGCTT
AAAGGTAATAAAATTT--
 A C G T A C G T A C T G C T G A A C T G T C G A G T A C G T C A A G C T C T G A T C A G G T C A A G T C C G A T C A T G A G T C G C A T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GAGACAYARACTGCTT
RGGGCACTAACY----
 A C T G C T G A A C T G T C G A G T A C G T C A A G C T C T G A T C A G G T C A A G T C C G A T C A T G A G T C G C A T A C G T
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GAGACAYARACTGCTT
TTGACAGG--------
 A C T G C T G A A C T G T C G A G T A C G T C A A G C T C T G A T C A G G T C A A G T C C G A T C A T G A G T C G C A T A C G T
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:GAGACAYARACTGCTT
-GRACAGWMTGTYCTB
 A C T G C T G A A C T G T C G A G T A C G T C A A G C T C T G A T C A G G T C A A G T C C G A T C A T G A G T C G C A T A C G T
A C G T C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.47
Offset:-2
Orientation:reverse strand
Alignment:--GAGACAYARACTGCTT
ARNTGACA----------
 A C G T A C G T A C T G C T G A A C T G T C G A G T A C G T C A A G C T C T G A T C A G G T C A A G T C C G A T C A T G A G T C G C A T A C G T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:10
Score:0.46
Offset:1
Orientation:reverse strand
Alignment:GAGACAYARACTGCTT
-GAACADWATGTTCTT
 A C T G C T G A A C T G T C G A G T A C G T C A A G C T C T G A T C A G G T C A A G T C C G A T C A T G A G T C G C A T A C G T
A C G T C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T