Information for 9-CTCAGTGTCA (Motif 25)

A G T C A G C T T G A C C T G A C T A G A C G T A C T G C G A T G T A C G T C A
Reverse Opposite:
A C G T A C T G G C T A G T A C C G T A G A T C G A C T A C T G C T G A T A C G
p-value:1e-9
log p-value:-2.302e+01
Information Content per bp:1.827
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.33%
Number of Background Sequences with motif300.9
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets51.6 +/- 24.2bp
Average Position of motif in Background52.4 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:CTCAGTGTCA-
----NTGTCAN
 A G T C A G C T T G A C C T G A C T A G A C G T A C T G C G A T G T A C G T C A A C G T
A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.70
Offset:5
Orientation:forward strand
Alignment:CTCAGTGTCA---
-----TGTCANYT
 A G T C A G C T T G A C C T G A C T A G A C G T A C T G C G A T G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTCAGTGTCA---
---VBTGWCAGCB
 A G T C A G C T T G A C C T G A C T A G A C G T A C T G C G A T G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

PH0164.1_Six4/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTCAGTGTCA-----
TNNNNGGTGTCATNTNT
 A C G T A C G T A G T C A G C T T G A C C T G A C T A G A C G T A C T G C G A T G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTCAGTGTCA-
---CCTGTCAA
 A G T C A G C T T G A C C T G A C T A G A C G T A C T G C G A T G T A C G T C A A C G T
A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CTCAGTGTCA--
----YTGWCADY
 A G T C A G C T T G A C C T G A C T A G A C G T A C T G C G A T G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTCAGTGTCA--
BTGABTGACAGS
 A G T C A G C T T G A C C T G A C T A G A C G T A C T G C G A T G T A C G T C A A C G T A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTCAGTGTCA
CTCATTGTC-
 A G T C A G C T T G A C C T G A C T A G A C G T A C T G C G A T G T A C G T C A
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTCAGTGTCA--
NTGATTGACAGN
 A G T C A G C T T G A C C T G A C T A G A C G T A C T G C G A T G T A C G T C A A C G T A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTCAGTGTCA--
-TCAAGGTCATA
 A G T C A G C T T G A C C T G A C T A G A C G T A C T G C G A T G T A C G T C A A C G T A C G T
A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A