Information for 13-KGCATTTTANATCAGG (Motif 17)

A C G T A C T G A G T C C G T A C G A T A G C T A C G T C G A T C G T A C G T A C G T A C G A T A T G C C G T A A C T G A C T G
Reverse Opposite:
G T A C G T A C C G A T A T C G C G T A A C G T A C G T A C G T C G T A C G T A C T G A C G T A C G A T A C T G G T A C G T C A
p-value:1e-11
log p-value:-2.534e+01
Information Content per bp:1.799
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.6 +/- 6.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---KGCATTTTANATCAGG
NNNNNNCTTTTATAN----
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G A T A G C T A C G T C G A T C G T A C G T A C G T A C G A T A T G C C G T A A C T G A C T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---KGCATTTTANATCAGG
NNNNNNCTTTTATAN----
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G A T A G C T A C G T C G A T C G T A C G T A C G T A C G A T A T G C C G T A A C T G A C T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:KGCATTTTANATCAGG
----ATTTGAATT---
 A C G T A C T G A G T C C G T A C G A T A G C T A C G T C G A T C G T A C G T A C G T A C G A T A T G C C G T A A C T G A C T G
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:KGCATTTTANATCAGG
--CCTTTTATAGNC--
 A C G T A C T G A G T C C G T A C G A T A G C T A C G T C G A T C G T A C G T A C G T A C G A T A T G C C G T A A C T G A C T G
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-KGCATTTTANATCAGG
ATGCATAATTAATGAG-
 A C G T A C G T A C T G A G T C C G T A C G A T A G C T A C G T C G A T C G T A C G T A C G T A C G A T A T G C C G T A A C T G A C T G
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G A C G T

POU4F2/MA0683.1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-KGCATTTTANATCAGG
ATGCATAATTAATGAG-
 A C G T A C G T A C T G A G T C C G T A C G A T A G C T A C G T C G A T C G T A C G T A C G T A C G A T A T G C C G T A A C T G A C T G
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:KGCATTTTANATCAGG
----TTTTATTRGN--
 A C G T A C T G A G T C C G T A C G A T A G C T A C G T C G A T C G T A C G T A C G T A C G A T A T G C C G T A A C T G A C T G
A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:KGCATTTTANATCAGG
-GCACTTAA-------
 A C G T A C T G A G T C C G T A C G A T A G C T A C G T C G A T C G T A C G T A C G T A C G A T A T G C C G T A A C T G A C T G
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:KGCATTTTANATCAGG
TNAATTTTATTACCTN
 A C G T A C T G A G T C C G T A C G A T A G C T A C G T C G A T C G T A C G T A C G T A C G A T A T G C C G T A A C T G A C T G
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

PB0080.1_Tbp_1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:KGCATTTTANATCAGG-
-NANTTATATATAANGN
 A C G T A C T G A G T C C G T A C G A T A G C T A C G T C G A T C G T A C G T A C G T A C G A T A T G C C G T A A C T G A C T G A C G T
A C G T A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A