Information for 2-WGDCTGTCCTGTS (Motif 3)

C G T A A T C G C T G A G T A C A G C T A T C G A G C T A G T C A G T C C G A T A C T G A G C T A T C G
Reverse Opposite:
T A G C T C G A T G A C C G T A A C T G T C A G T C G A A T G C C T G A C A T G G A C T A T G C G C A T
p-value:1e-15
log p-value:-3.671e+01
Information Content per bp:1.585
Number of Target Sequences with motif127.0
Percentage of Target Sequences with motif18.35%
Number of Background Sequences with motif3895.2
Percentage of Background Sequences with motif8.43%
Average Position of motif in Targets49.6 +/- 24.6bp
Average Position of motif in Background50.5 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:WGDCTGTCCTGTS
---CTGTTCCTGG
 C G T A A T C G C T G A G T A C A G C T A T C G A G C T A G T C A G T C C G A T A C T G A G C T A T C G
A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:WGDCTGTCCTGTS
----TGACCTYA-
 C G T A A T C G C T G A G T A C A G C T A T C G A G C T A G T C A G T C C G A T A C T G A G C T A T C G
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:WGDCTGTCCTGTS
---CTGACCTTTG
 C G T A A T C G C T G A G T A C A G C T A T C G A G C T A G T C A G T C C G A T A C T G A G C T A T C G
A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:4
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----WGDCTGTCCTGTS
GVACAGNMTGTYCTB--
 A C G T A C G T A C G T A C G T C G T A A T C G C T G A G T A C A G C T A T C G A G C T A G T C A G T C C G A T A C T G A G C T A T C G
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:WGDCTGTCCTGTS
---GTGACCTT--
 C G T A A T C G C T G A G T A C A G C T A T C G A G C T A G T C A G T C C G A T A C T G A G C T A T C G
A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----WGDCTGTCCTGTS
GRACAGWMTGTYCTB--
 A C G T A C G T A C G T A C G T C G T A A T C G C T G A G T A C A G C T A T C G A G C T A G T C A G T C C G A T A C T G A G C T A T C G
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:WGDCTGTCCTGTS
----TGACCT---
 C G T A A T C G C T G A G T A C A G C T A T C G A G C T A G T C A G T C C G A T A C T G A G C T A T C G
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:WGDCTGTCCTGTS
--GCTGTG-----
 C G T A A T C G C T G A G T A C A G C T A T C G A G C T A G T C A G T C C G A T A C T G A G C T A T C G
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----WGDCTGTCCTGTS
AGNACAGNCTGTTCTN--
 A C G T A C G T A C G T A C G T A C G T C G T A A T C G C T G A G T A C A G C T A T C G A G C T A G T C A G T C C G A T A C T G A G C T A T C G
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T A C G T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----WGDCTGTCCTGTS
AGNACANNNTGTNCTN--
 A C G T A C G T A C G T A C G T A C G T C G T A A T C G C T G A G T A C A G C T A T C G A G C T A G T C A G T C C G A T A C T G A G C T A T C G
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C A C G T A C G T