Information for 4-GCAAAATGCA (Motif 15)

A T C G A G T C G T C A G T C A C G T A C G T A C G A T C A T G T A G C C G T A
Reverse Opposite:
C G A T A T C G G T A C G C T A A C G T A C G T A C G T A C G T T C A G A T G C
p-value:1e-8
log p-value:-1.975e+01
Information Content per bp:1.836
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif3.10%
Number of Background Sequences with motif84.4
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets59.2 +/- 26.5bp
Average Position of motif in Background52.8 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCAAAATGCA---
ATGCATWATGCATRW
 A C G T A C G T A T C G A G T C G T C A G T C A C G T A C G T A C G A T C A T G T A G C C G T A A C G T A C G T A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCAAAATGCA
ATGCATAATTCA
 A C G T A C G T A T C G A G T C G T C A G T C A C G T A C G T A C G A T C A T G T A G C C G T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

ZNF143/MA0088.2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCAAAATGCA---
TACCCACAATGCATTG
 A C G T A C G T A C G T A T C G A G T C G T C A G T C A C G T A C G T A C G A T C A T G T A G C C G T A A C G T A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCAAAATGCA---
GAAAAAATTGCAAGG
 A C G T A C G T A T C G A G T C G T C A G T C A C G T A C G T A C G A T C A T G T A G C C G T A A C G T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAATGCA
CAATTGCAAAAATAT
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C G T C A G T C A C G T A C G T A C G A T C A T G T A G C C G T A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCAAAATGCA---
ATGAATWATTCATGA
 A C G T A C G T A T C G A G T C G T C A G T C A C G T A C G T A C G A T C A T G T A G C C G T A A C G T A C G T A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------GCAAAATGCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C G T C A G T C A C G T A C G T A C G A T C A T G T A G C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAATGCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C G T C A G T C A C G T A C G T A C G A T C A T G T A G C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

NFATC2/MA0152.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAATGCA
TGGAAAA----
 A C G T A T C G A G T C G T C A G T C A C G T A C G T A C G A T C A T G T A G C C G T A
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAATGCA
VRRACAAWGG-
 A C G T A T C G A G T C G T C A G T C A C G T A C G T A C G A T C A T G T A G C C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T