Information for 12-CTCAGTTGCA (Motif 42)

A G T C A C G T A G T C C G T A A C T G A C G T A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G T A C G T A A G T C A C G T A C T G C G T A A C T G
p-value:1e-6
log p-value:-1.453e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 22.6bp
Average Position of motif in Background48.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTCAGTTGCA--
CTCATTTGCATW
 A G T C A C G T A G T C C G T A A C T G A C G T A C G T A C T G A G T C C G T A A C G T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTCAGTTGCA---
TTCATTTGCATAT
 A G T C A C G T A G T C C G T A A C T G A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

POU1F1/MA0784.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTCAGTTGCA----
CTAATTTGCATATT
 A G T C A C G T A G T C C G T A A C T G A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTCAGTTGCA
CGCAGCTGCG
 A G T C A C G T A G T C C G T A A C T G A C G T A C G T A C T G A G T C C G T A
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGTTGCA-----
TNTAATTTGCATANNN
 A C G T A G T C A C G T A G T C C G T A A C T G A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Pou2f3/MA0627.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGTTGCA-----
TNTAATTTGCATACNA
 A C G T A G T C A C G T A G T C C G T A A C T G A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGTTGCA-----
TNTAATTTGCATACNA
 A C G T A G T C A C G T A G T C C G T A A C T G A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCAGTTGCA----
ATCCACAGGTGCGAAAA
 A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C T G A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTCAGTTGCA
NNVVCAGCTGBN
 A C G T A C G T A G T C A C G T A G T C C G T A A C T G A C G T A C G T A C T G A G T C C G T A
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

TCF4/MA0830.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTCAGTTGCA
NNCAGGTGCG
 A G T C A C G T A G T C C G T A A C T G A C G T A C G T A C T G A G T C C G T A
G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G