Information for 8-GTCATGGCAA (Motif 40)

A C T G A C G T G T A C C G T A C G A T A C T G A C T G T A G C G T C A G T C A
Reverse Opposite:
A C G T A C G T A T C G A G T C A G T C G C T A A C G T C A T G T G C A A G T C
p-value:1e-7
log p-value:-1.650e+01
Information Content per bp:1.838
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif105.5
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets52.2 +/- 22.6bp
Average Position of motif in Background50.8 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GTCATGGCAA--
TTGCCATGGCAACN
 A C G T A C G T A C T G A C G T G T A C C G T A C G A T A C T G A C T G T A G C G T C A G T C A A C G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GTCATGGCAA--
TTGCCATGGCAACC
 A C G T A C G T A C T G A C G T G T A C C G T A C G A T A C T G A C T G T A G C G T C A G T C A A C G T A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTCATGGCAA
GTCATN----
 A C T G A C G T G T A C C G T A C G A T A C T G A C T G T A G C G T C A G T C A
T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTCATGGCAA-
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C T G A C G T G T A C C G T A C G A T A C T G A C T G T A G C G T C A G T C A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GTCATGGCAA-
KGTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A C T G A C G T G T A C C G T A C G A T A C T G A C T G T A G C G T C A G T C A A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GTCATGGCAA---
GTTGCCATGGCAACCG
 A C G T A C G T A C G T A C T G A C G T G T A C C G T A C G A T A C T G A C T G T A G C G T C A G T C A A C G T A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Pax2/MA0067.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTCATGGCAA
AGTCACGC---
 A C G T A C T G A C G T G T A C C G T A C G A T A C T G A C T G T A G C G T C A G T C A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTCATGGCAA--
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C T G A C G T G T A C C G T A C G A T A C T G A C T G T A G C G T C A G T C A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GTCATGGCAA--
CGTTGCCATGGCAACN
 A C G T A C G T A C G T A C G T A C T G A C G T G T A C C G T A C G A T A C T G A C T G T A G C G T C A G T C A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GTCATGGCAA--
--NATGGAAAAN
 A C T G A C G T G T A C C G T A C G A T A C T G A C T G T A G C G T C A G T C A A C G T A C G T
A C G T A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T