Information for 9-GGTAASTGCAGGC (Motif 17)

A C T G A C T G C G A T C T G A G T C A A T G C A C G T A C T G A T G C C G T A A C T G C T A G A G T C
Reverse Opposite:
C T A G A G T C A G T C C G A T A T C G G T A C C G T A A T C G A C G T A G C T G C T A A G T C A G T C
p-value:1e-10
log p-value:-2.422e+01
Information Content per bp:1.799
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif13.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets62.2 +/- 16.1bp
Average Position of motif in Background52.7 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGTAASTGCAGGC
GGGAATTGTAGT-
 A C T G A C T G C G A T C T G A G T C A A T G C A C G T A C T G A T G C C G T A A C T G C T A G A G T C
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGTAASTGCAGGC
CAGGTAAGTAT----
 A C G T A C G T A C T G A C T G C G A T C T G A G T C A A T G C A C G T A C T G A T G C C G T A A C T G C T A G A G T C
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGTAASTGCAGGC--
GGGTTACTANAGGTCA
 A C G T A C T G A C T G C G A T C T G A G T C A A T G C A C G T A C T G A T G C C G T A A C T G C T A G A G T C A C G T A C G T
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GGTAASTGCAGGC--
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T A C G T A C T G A C T G C G A T C T G A G T C A A T G C A C G T A C T G A T G C C G T A A C T G C T A G A G T C A C G T A C G T
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGTAASTGCAGGC
AGAGRRACAGCWGAC
 A C G T A C G T A C T G A C T G C G A T C T G A G T C A A T G C A C G T A C T G A T G C C G T A A C T G C T A G A G T C
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C

ISL2/MA0914.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGTAASTGCAGGC
-TTAAGTGC----
 A C T G A C T G C G A T C T G A G T C A A T G C A C G T A C T G A T G C C G T A A C T G C T A G A G T C
A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGTAASTGCAGGC-
--AAAATGCTGACT
 A C T G A C T G C G A T C T G A G T C A A T G C A C G T A C T G A T G C C G T A A C T G C T A G A G T C A C G T
A C G T A C G T C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.53
Offset:-10
Orientation:reverse strand
Alignment:----------GGTAASTGCAGGC
TGGCCANNNNNGGAACTGCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G A T C T G A G T C A A T G C A C G T A C T G A T G C C G T A A C T G C T A G A G T C
G C A T C T A G C A T G G A T C G A T C C T G A G A T C G C A T A C T G A G C T C A G T C T A G C A T G G C T A C G T A A G T C C G A T C T A G A T G C G C T A A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGTAASTGCAGGC
--AATTTGCTGAC
 A C T G A C T G C G A T C T G A G T C A A T G C A C G T A C T G A T G C C G T A A C T G C T A G A G T C
A C G T A C G T C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GGTAASTGCAGGC
-GWAAYHTGAKMC
 A C T G A C T G C G A T C T G A G T C A A T G C A C G T A C T G A T G C C G T A A C T G C T A G A G T C
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C