Information for 3-CTCTGCHATCCCCCAT (Motif 3)

A G T C A G C T G A T C A C G T A C T G G T A C G A T C C G T A A C G T G T A C A G T C G T A C A G T C A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C T A G A C T G A C T G A C T G C G T A C G A T C T A G A C T G A G T C C G T A C T A G C T G A A C T G
p-value:1e-12
log p-value:-2.795e+01
Information Content per bp:1.811
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.5 +/- 27.5bp
Average Position of motif in Background37.8 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTCTGCHATCCCCCAT
----GYCATCMATCAT
 A G T C A G C T G A T C A C G T A C T G G T A C G A T C C G T A A C G T G T A C A G T C G T A C A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTCTGCHATCCCCCAT
GYCTGGYYTNTGTCA-
 A G T C A G C T G A T C A C G T A C T G G T A C G A T C C G T A A C G T G T A C A G T C G T A C A G T C A G T C C G T A A C G T
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.54
Offset:7
Orientation:forward strand
Alignment:CTCTGCHATCCCCCAT--
-------GTCCGCCATTA
 A G T C A G C T G A T C A C G T A C T G G T A C G A T C C G T A A C G T G T A C A G T C G T A C A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTCTGCHATCCCCCAT
AGATGCAATCCC----
 A G T C A G C T G A T C A C G T A C T G G T A C G A T C C G T A A C G T G T A C A G T C G T A C A G T C A G T C C G T A A C G T
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CTCTGCHATCCCCCAT
CCTTTGATGT-------
 A C G T A G T C A G C T G A T C A C G T A C T G G T A C G A T C C G T A A C G T G T A C A G T C G T A C A G T C A G T C C G T A A C G T
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GCM2/MA0767.1/Jaspar

Match Rank:6
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CTCTGCHATCCCCCAT-
-------TACCCGCATN
 A G T C A G C T G A T C A C G T A C T G G T A C G A T C C G T A A C G T G T A C A G T C G T A C A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.50
Offset:6
Orientation:forward strand
Alignment:CTCTGCHATCCCCCAT
------ATTGCATCAT
 A G T C A G C T G A T C A C G T A C T G G T A C G A T C C G T A A C G T G T A C A G T C G T A C A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:CTCTGCHATCCCCCAT
---KGCCCTTCCCCA-
 A G T C A G C T G A T C A C G T A C T G G T A C G A T C C G T A A C G T G T A C A G T C G T A C A G T C A G T C C G T A A C G T
A C G T A C G T A C G T C A G T C A T G G A T C G A T C G A T C G A C T A G C T T G A C G A T C G A T C G A T C C T G A A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:9
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:CTCTGCHATCCCCCAT--
--------TTCCCCCTAC
 A G T C A G C T G A T C A C G T A C T G G T A C G A T C C G T A A C G T G T A C A G T C G T A C A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:10
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:CTCTGCHATCCCCCAT
---RGCCATYAATCA-
 A G T C A G C T G A T C A C G T A C T G G T A C G A T C C G T A A C G T G T A C A G T C G T A C A G T C A G T C C G T A A C G T
A C G T A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T