Information for 9-CTCGGTTCAT (Motif 26)

A G T C A C G T A G T C A C T G A C T G A C G T A C G T A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C G T A C G T A A G T C A G T C A C T G C G T A A C T G
p-value:1e-6
log p-value:-1.455e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.3 +/- 21.0bp
Average Position of motif in Background76.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0138.1_Irf4_2/Jaspar

Match Rank:1
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CTCGGTTCAT
AGTATTCTCGGTTGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C G T A C G T A G T C C G T A A C G T
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:2
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------CTCGGTTCAT
NNAATTCTCGNTNAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C G T A C G T A G T C C G T A A C G T
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A A C G T

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTCGGTTCAT
TGTCGGTT---
 A C G T A G T C A C G T A G T C A C T G A C T G A C G T A C G T A G T C C G T A A C G T
C G A T C A T G C G A T G A T C T C A G A T C G G C A T G C A T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTCGGTTCAT---
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTCGGTTCAT---
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CTCGGTTCAT
ACCACTCTCGGTCAC-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C G T A C G T A G T C C G T A A C G T
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTCGGTTCAT
--NGGATTAN
 A G T C A C G T A G T C A C T G A C T G A C G T A C G T A G T C C G T A A C G T
A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CTCGGTTCAT-
-----GTCATN
 A G T C A C G T A G T C A C T G A C T G A C G T A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CTCGGTTCAT
---AGGTCA-
 A G T C A C G T A G T C A C T G A C T G A C G T A C G T A G T C C G T A A C G T
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CTCGGTTCAT----
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A