Information for 8-ACCGTGGCAA (Motif 25)

G C T A G T A C A G T C C A T G A C G T A C T G C T A G A G T C G T C A G T C A
Reverse Opposite:
A C G T A C G T A C T G A G T C G T A C C G T A G A T C A C T G A C T G C A G T
p-value:1e-6
log p-value:-1.455e+01
Information Content per bp:1.774
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets20.7 +/- 18.1bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:ACCGTGGCAA
-NCGTGACN-
 G C T A G T A C A G T C C A T G A C G T A C T G C T A G A G T C G T C A G T C A
A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:ACCGTGGCAA
--CTTGGCAA
 G C T A G T A C A G T C C A T G A C G T A C T G C T A G A G T C G T C A G T C A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---ACCGTGGCAA-
GTTGCCATGGCAAC
 A C G T A C G T A C G T G C T A G T A C A G T C C A T G A C G T A C T G C T A G A G T C G T C A G T C A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ACCGTGGCAA----
TACCATAGCAACGGT
 A C G T G C T A G T A C A G T C C A T G A C G T A C T G C T A G A G T C G T C A G T C A A C G T A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0147.1_Max_2/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----ACCGTGGCAA
NNGTCGCGTGNCAC
 A C G T A C G T A C G T A C G T G C T A G T A C A G T C C A T G A C G T A C T G C T A G A G T C G T C A G T C A
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ACCGTGGCAA--
TTGCCATGGCAACN
 A C G T A C G T G C T A G T A C A G T C C A T G A C G T A C T G C T A G A G T C G T C A G T C A A C G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

CREB3L1/MA0839.1/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ACCGTGGCAA
TGATGACGTGGCAN
 A C G T A C G T A C G T A C G T G C T A G T A C A G T C C A T G A C G T A C T G C T A G A G T C G T C A G T C A
G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T

Creb3l2/MA0608.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ACCGTGGCAA
ACACGTGGC--
 A C G T G C T A G T A C A G T C C A T G A C G T A C T G C T A G A G T C G T C A G T C A
G C T A A T G C C G T A A G T C A C T G A C G T A T C G C A T G G T A C A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ACCGTGGCAA--
TTGCCATGGCAACC
 A C G T A C G T G C T A G T A C A G T C C A T G A C G T A C T G C T A G A G T C G T C A G T C A A C G T A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ACCGTGGCAA-
--NTTGGCANN
 G C T A G T A C A G T C C A T G A C G T A C T G C T A G A G T C G T C A G T C A A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G