Information for 6-CATCAMCMAGGTT (Motif 16)

T A G C C G T A A C G T A T G C C G T A G T A C A G T C G T C A C G T A T A C G C T A G A G C T A C G T
Reverse Opposite:
G T C A C T G A A G T C A T G C C G A T A C G T A C T G A C T G A C G T A T C G C G T A A C G T A T C G
p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.777
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif51.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets61.5 +/- 21.8bp
Average Position of motif in Background51.2 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CATCAMCMAGGTT
GGCCATTAAC------
 A C G T A C G T A C G T T A G C C G T A A C G T A T G C C G T A G T A C A G T C G T C A C G T A T A C G C T A G A G C T A C G T
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CATCAMCMAGGTT
CATGAC-------
 T A G C C G T A A C G T A T G C C G T A G T A C A G T C G T C A C G T A T A C G C T A G A G C T A C G T
T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxj2/MA0614.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CATCAMCMAGGTT
-GTAAACAA----
 T A G C C G T A A C G T A T G C C G T A G T A C A G T C G T C A C G T A T A C G C T A G A G C T A C G T
A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CATCAMCMAGGTT
TCACCCATCAATAAACA-
 A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C G T A T G C C G T A G T A C A G T C G T C A C G T A T A C G C T A G A G C T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CATCAMCMAGGTT-
NNNNATGACCTTGANTN
 A C G T A C G T A C G T T A G C C G T A A C G T A T G C C G T A G T A C A G T C G T C A C G T A T A C G C T A G A G C T A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CATCAMCMAGGTT
YCATTAMC------
 A C G T T A G C C G T A A C G T A T G C C G T A G T A C A G T C G T C A C G T A T A C G C T A G A G C T A C G T
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CATCAMCMAGGTT
TCATCAATCA----
 A C G T T A G C C G T A A C G T A T G C C G T A G T A C A G T C G T C A C G T A T A C G C T A G A G C T A C G T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CATCAMCMAGGTT
-ATGACCTTGAA-
 T A G C C G T A A C G T A T G C C G T A G T A C A G T C G T C A C G T A T A C G C T A G A G C T A C G T
A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CATCAMCMAGGTT
--TGACCTTGAT-
 T A G C C G T A A C G T A T G C C G T A G T A C A G T C G T C A C G T A T A C G C T A G A G C T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CATCAMCMAGGTT
-GTAAACAWBN--
 T A G C C G T A A C G T A T G C C G T A G T A C A G T C G T C A C G T A T A C G C T A G A G C T A C G T
A C G T C T A G C G A T G T C A G T C A T G C A G A T C G C T A G C T A A C T G T C G A A C G T A C G T