Information for 6-CATRTYAKRCAAAGCC (Motif 9)

G T A C G T C A A C G T C T A G A C G T A G T C C G T A A C T G C T A G A G T C C G T A C G T A C G T A A C T G A G T C A G T C
Reverse Opposite:
C T A G A C T G A G T C A C G T A C G T A C G T A C T G G A T C G T A C A C G T T C A G C G T A A G T C C G T A A C G T A C T G
p-value:1e-11
log p-value:-2.639e+01
Information Content per bp:1.880
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 28.3bp
Average Position of motif in Background34.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CATRTYAKRCAAAGCC
----TTATGCAAAT--
 G T A C G T C A A C G T C T A G A C G T A G T C C G T A A C T G C T A G A G T C C G T A C G T A C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:2
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:CATRTYAKRCAAAGCC
--------ACAAAG--
 G T A C G T C A A C G T C T A G A C G T A G T C C G T A A C T G C T A G A G T C C G T A C G T A C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CATRTYAKRCAAAGCC--
--AAACAGACAAAGGAAT
 G T A C G T C A A C G T C T A G A C G T A G T C C G T A A C T G C T A G A G T C C G T A C G T A C G T A A C T G A G T C A G T C A C G T A C G T
A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CATRTYAKRCAAAGCC
-----AAAACAAAGG-
 G T A C G T C A A C G T C T A G A C G T A G T C C G T A A C T G C T A G A G T C C G T A C G T A C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CATRTYAKRCAAAGCC
-----VRRACAAWGG-
 G T A C G T C A A C G T C T A G A C G T A G T C C G T A A C T G C T A G A G T C C G T A C G T A C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CATRTYAKRCAAAGCC
CATTGTTATGCAAAT--
 A C G T G T A C G T C A A C G T C T A G A C G T A G T C C G T A A C T G C T A G A G T C C G T A C G T A C G T A A C T G A G T C A G T C
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CATRTYAKRCAAAGCC
CTTTGTTATGCAAAT--
 A C G T G T A C G T C A A C G T C T A G A C G T A G T C C G T A A C T G C T A G A G T C C G T A C G T A C G T A A C T G A G T C A G T C
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CATRTYAKRCAAAGCC
---RTTATGYAAB---
 G T A C G T C A A C G T C T A G A C G T A G T C C G T A A C T G C T A G A G T C C G T A C G T A C G T A A C T G A G T C A G T C
A C G T A C G T A C G T T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CATRTYAKRCAAAGCC-
----ATATGCAAATNNN
 G T A C G T C A A C G T C T A G A C G T A G T C C G T A A C T G C T A G A G T C C G T A C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:CATRTYAKRCAAAGCC----
--------ACAAAGGNBCCT
 G T A C G T C A A C G T C T A G A C G T A G T C C G T A A C T G C T A G A G T C C G T A C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T