Information for 2-AGAGACATGA (Motif 6)

T G C A A C T G C T G A A C T G T C G A G T A C G C T A A C G T T C A G G T C A
Reverse Opposite:
C A G T A G T C C G T A C G A T A C T G A G C T G T A C A G C T G T A C A C G T
p-value:1e-12
log p-value:-2.824e+01
Information Content per bp:1.827
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.88%
Number of Background Sequences with motif150.0
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets45.1 +/- 26.7bp
Average Position of motif in Background53.7 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGAGACATGA---
-GWAAYHTGABMC
 T G C A A C T G C T G A A C T G T C G A G T A C G C T A A C G T T C A G G T C A A C G T A C G T A C G T
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AGAGACATGA--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T T G C A A C T G C T G A A C T G T C G A G T A C G C T A A C G T T C A G G T C A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0126.1_Gata5_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGAGACATGA----
GACAGAGATATCAGTGT
 A C G T A C G T A C G T T G C A A C T G C T G A A C T G T C G A G T A C G C T A A C G T T C A G G T C A A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AGAGACATGA
GGTTAGAGACCT--
 A C G T A C G T A C G T A C G T T G C A A C T G C T G A A C T G T C G A G T A C G C T A A C G T T C A G G T C A
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGAGACATGA-
-----CATGAC
 T G C A A C T G C T G A A C T G T C G A G T A C G C T A A C G T T C A G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C

DMRT3/MA0610.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGAGACATGA
NTTGATACATT-
 A C G T A C G T T G C A A C T G C T G A A C T G T C G A G T A C G C T A A C G T T C A G G T C A
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGAGACATGA---
-GWAAYHTGAKMC
 T G C A A C T G C T G A A C T G T C G A G T A C G C T A A C G T T C A G G T C A A C G T A C G T A C G T
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

NFE2/MA0841.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGAGACATGA
GATGAGTCATN-
 A C G T A C G T T G C A A C T G C T G A A C T G T C G A G T A C G C T A A C G T T C A G G T C A
T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G A C G T

PB0021.1_Gata3_1/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----AGAGACATGA-------
TTTTTAGAGATAAGAAATAAAG
 A C G T A C G T A C G T A C G T A C G T T G C A A C T G C T G A A C T G T C G A G T A C G C T A A C G T T C A G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G

JDP2/MA0655.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGAGACATGA
ATGAGTCAT--
 A C G T T G C A A C T G C T G A A C T G T C G A G T A C G C T A A C G T T C A G G T C A
C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T A C G T