Information for 9-GGGTKGGGTCATA (Motif 18)

C T A G A C T G C T A G G A C T C A G T C T A G C T A G T C A G G A C T A T G C C G T A A C G T C T G A
Reverse Opposite:
A G C T C G T A C G A T T A C G C T G A A G T C A G T C G A T C G T C A C T G A G A T C G T A C G A T C
p-value:1e-9
log p-value:-2.084e+01
Information Content per bp:1.683
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.43%
Number of Background Sequences with motif158.7
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets53.2 +/- 26.3bp
Average Position of motif in Background47.0 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGGTKGGGTCATA--
AGAGCGGGGTCAAGTA
 A C G T C T A G A C T G C T A G G A C T C A G T C T A G C T A G T C A G G A C T A T G C C G T A A C G T C T G A A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.70
Offset:5
Orientation:forward strand
Alignment:GGGTKGGGTCATA
-----AGGTCA--
 C T A G A C T G C T A G G A C T C A G T C T A G C T A G T C A G G A C T A T G C C G T A A C G T C T G A
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGGTKGGGTCATA---
NTNNNGGGGTCANGNNN
 A C G T C T A G A C T G C T A G G A C T C A G T C T A G C T A G T C A G G A C T A T G C C G T A A C G T C T G A A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGGTKGGGTCATA---
GGCGAGGGGTCAAGGGC
 A C G T C T A G A C T G C T A G G A C T C A G T C T A G C T A G T C A G G A C T A T G C C G T A A C G T C T G A A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGGTKGGGTCATA--
CGCGCCGGGTCACGTA
 A C G T C T A G A C T G C T A G G A C T C A G T C T A G C T A G T C A G G A C T A T G C C G T A A C G T C T G A A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GGGTKGGGTCATA
---TRAGGTCA--
 C T A G A C T G C T A G G A C T C A G T C T A G C T A G T C A G G A C T A T G C C G T A A C G T C T G A
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GGGTKGGGTCATA
NNVDGGGYGGGGCYN--
 A C G T A C G T A C G T A C G T C T A G A C T G C T A G G A C T C A G T C T A G C T A G T C A G G A C T A T G C C G T A A C G T C T G A
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GGGTKGGGTCATA
---AGRGGTCA--
 C T A G A C T G C T A G G A C T C A G T C T A G C T A G T C A G G A C T A T G C C G T A A C G T C T G A
A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

PB0039.1_Klf7_1/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GGGTKGGGTCATA
NNAGGGGCGGGGTNNA-
 A C G T A C G T A C G T A C G T C T A G A C T G C T A G G A C T C A G T C T A G C T A G T C A G G A C T A T G C C G T A A C G T C T G A
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:10
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:GGGTKGGGTCATA
-------GTCATN
 C T A G A C T G C T A G G A C T C A G T C T A G C T A G T C A G G A C T A T G C C G T A A C G T C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G