Information for 21-GRAAYGCCCTGYT (Motif 23)

A C T G C T G A G T C A C G T A A G C T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A G C T
Reverse Opposite:
C T G A C T A G A G T C C G T A A C T G A C T G A C T G A G T C C T G A A C G T A C G T G A C T A G T C
p-value:1e-7
log p-value:-1.752e+01
Information Content per bp:1.890
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.4 +/- 21.6bp
Average Position of motif in Background25.2 +/- 10.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GRAAYGCCCTGYT
GGAAATCCCC----
 A C G T A C T G C T G A G T C A C G T A A G C T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A G C T
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GRAAYGCCCTGYT
GGAAATTCCC----
 A C G T A C T G C T G A G T C A C G T A A G C T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A G C T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GRAAYGCCCTGYT
GGAAANCCCC---
 A C T G C T G A G T C A C G T A A G C T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A G C T
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GRAAYGCCCTGYT
GGAAATTCCC----
 A C G T A C T G C T G A G T C A C G T A A G C T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A G C T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GRAAYGCCCTGYT
GGGAAATCCCCN---
 A C G T A C G T A C T G C T G A G T C A C G T A A G C T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A G C T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GRAAYGCCCTGYT-
----TGCCCAGNHW
 A C T G C T G A G T C A C G T A A G C T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A G C T A C G T
A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GRAAYGCCCTGYT
GGGGGAATCCCC----
 A C G T A C G T A C G T A C T G C T G A G T C A C G T A A G C T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A G C T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GRAAYGCCCTGYT-
AAGCATACGCCCAACTT
 A C G T A C G T A C G T A C T G C T G A G T C A C G T A A G C T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A G C T A C G T
T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GRAAYGCCCTGYT-
AGAAATGACTTCCCT
 A C G T A C T G C T G A G T C A C G T A A G C T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A G C T A C G T
C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

NFKB1/MA0105.4/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GRAAYGCCCTGYT
AGGGGATTCCCCT---
 A C G T A C G T A C G T A C T G C T G A G T C A C G T A A G C T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A G C T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T A C G T A C G T