Information for 4-CCAAGGAAATCCC (Motif 8)

A G T C G T A C C G T A C G T A A C T G A C T G C T G A C G T A G T C A A G C T A G T C G T A C A G T C
Reverse Opposite:
A C T G A C T G C T A G C T G A A C G T A C G T A G C T A G T C A G T C A C G T A C G T A C T G A C T G
p-value:1e-12
log p-value:-2.833e+01
Information Content per bp:1.850
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.8 +/- 28.9bp
Average Position of motif in Background40.1 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RELA/MA0107.1/Jaspar

Match Rank:1
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CCAAGGAAATCCC-
----GGAAATTCCC
 A G T C G T A C C G T A C G T A A C T G A C T G C T G A C G T A G T C A A G C T A G T C G T A C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CCAAGGAAATCCC-
----GGAAATCCCC
 A G T C G T A C C G T A C G T A A C T G A C T G C T G A C G T A G T C A A G C T A G T C G T A C A G T C A C G T
A C G T A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CCAAGGAAATCCC-
----GGAAANCCCC
 A G T C G T A C C G T A C G T A A C T G A C T G C T G A C G T A G T C A A G C T A G T C G T A C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CCAAGGAAATCCC--
---GGGAAATCCCCN
 A G T C G T A C C G T A C G T A A C T G A C T G C T G A C G T A G T C A A G C T A G T C G T A C A G T C A C G T A C G T
A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CCAAGGAAATCCC-
----GGAAATTCCC
 A G T C G T A C C G T A C G T A A C T G A C T G C T G A C G T A G T C A A G C T A G T C G T A C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCAAGGAAATCCC
NACAGGAAAT---
 A G T C G T A C C G T A C G T A A C T G A C T G C T G A C G T A G T C A A G C T A G T C G T A C A G T C
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCAAGGAAATCCC--
--AGGGGAATCCCCT
 A G T C G T A C C G T A C G T A A C T G A C T G C T G A C G T A G T C A A G C T A G T C G T A C A G T C A C G T A C G T
A C G T A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

EBF1/MA0154.3/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCAAGGAAATCCC
ATTCCCAAGGGAAT---
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A C G T A A C T G A C T G C T G A C G T A G T C A A G C T A G T C G T A C A G T C
C T G A A C G T G A C T A T G C A G T C A G T C G C T A C G T A T C A G T C A G C A T G C T G A G T C A G A C T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCAAGGAAATCCC--
--AGGGGAATCCCCT
 A G T C G T A C C G T A C G T A A C T G A C T G C T G A C G T A G T C A A G C T A G T C G T A C A G T C A C G T A C G T
A C G T A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:10
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------CCAAGGAAATCCC
TATAGATCAAAGGAAAA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A C G T A A C T G A C T G C T G A C G T A G T C A A G C T A G T C G T A C A G T C
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A A C G T A C G T A C G T