Information for 5-CWGGACATTTCMAAGT (Motif 6)

A G T C G C A T C T A G T A C G G C T A A G T C C G T A C G A T G A C T A G C T G T A C G T A C G T C A T C G A A C T G A C G T
Reverse Opposite:
G T C A A G T C A G C T A C G T A C T G A C T G C T G A C G T A G C T A C G A T A C T G C A G T A T G C A G T C C G T A A C T G
p-value:1e-13
log p-value:-3.100e+01
Information Content per bp:1.707
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.6 +/- 28.4bp
Average Position of motif in Background53.9 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CWGGACATTTCMAAGT
------ACATCAAAGG
 A G T C G C A T C T A G T A C G G C T A A G T C C G T A C G A T G A C T A G C T G T A C G T A C G T C A T C G A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

PB0165.1_Sox11_2/Jaspar

Match Rank:2
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CWGGACATTTCMAAGT
NNCNNAACAATTNT----
 A C G T A C G T A G T C G C A T C T A G T A C G G C T A A G T C C G T A C G A T G A C T A G C T G T A C G T A C G T C A T C G A A C T G A C G T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:CWGGACATTTCMAAGT------
-----NANTTTCAAGTGGTTAN
 A G T C G C A T C T A G T A C G G C T A A G T C C G T A C G A T G A C T A G C T G T A C G T A C G T C A T C G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CWGGACATTTCMAAGT--
-AGGTCATGCAAAGGTCA
 A G T C G C A T C T A G T A C G G C T A A G T C C G T A C G A T G A C T A G C T G T A C G T A C G T C A T C G A A C T G A C G T A C G T A C G T
A C G T T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CWGGACATTTCMAAGT--
-AGGTCAACTAAAGGTCA
 A G T C G C A T C T A G T A C G G C T A A G T C C G T A C G A T G A C T A G C T G T A C G T A C G T C A T C G A A C T G A C G T A C G T A C G T
A C G T T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.49
Offset:6
Orientation:forward strand
Alignment:CWGGACATTTCMAAGT
------ACWTCAAAGG
 A G T C G C A T C T A G T A C G G C T A A G T C C G T A C G A T G A C T A G C T G T A C G T A C G T C A T C G A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CWGGACATTTCMAAGT
TNCNNAACAATTTTTNC-
 A C G T A C G T A G T C G C A T C T A G T A C G G C T A A G T C C G T A C G A T G A C T A G C T G T A C G T A C G T C A T C G A A C T G A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---CWGGACATTTCMAAGT
WDNCTGGGCA---------
 A C G T A C G T A C G T A G T C G C A T C T A G T A C G G C T A A G T C C G T A C G A T G A C T A G C T G T A C G T A C G T C A T C G A A C T G A C G T
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---CWGGACATTTCMAAGT
NNATTGGACTTTNGNN---
 A C G T A C G T A C G T A G T C G C A T C T A G T A C G G C T A A G T C C G T A C G A T G A C T A G C T G T A C G T A C G T C A T C G A A C T G A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CWGGACATTTCMAAGT
AAAATACATGTAAAAAT
 A C G T A G T C G C A T C T A G T A C G G C T A A G T C C G T A C G A T G A C T A G C T G T A C G T A C G T C A T C G A A C T G A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T