Information for 19-GGGGTCAGBACTGCCA (Motif 34)

A C T G C A T G A C T G A T C G A C G T A G T C C G T A A T C G A G T C C T G A T A G C A C G T A C T G A G T C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G A G T C T G C A A T C G A G C T T A C G A T G C A C G T C T A G G T C A A T G C A G T C G T A C A G T C
p-value:1e-7
log p-value:-1.755e+01
Information Content per bp:1.772
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.2 +/- 31.9bp
Average Position of motif in Background62.1 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGTCAGBACTGCCA
NTNNNGGGGTCANGNNN----
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A T C G A G T C C T G A T A G C A C G T A C T G A G T C A G T C G T C A
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGGGTCAGBACTGCCA
AGRGGTCA---------
 A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A T C G A G T C C T G A T A G C A C G T A C T G A G T C A G T C G T C A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCAGBACTGCCA
GGCGAGGGGTCAAGGGC----
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A T C G A G T C C T G A T A G C A C G T A C T G A G T C A G T C G T C A
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.56
Offset:9
Orientation:forward strand
Alignment:GGGGTCAGBACTGCCA--
---------CGTGCCAAG
 A C T G C A T G A C T G A T C G A C G T A G T C C G T A A T C G A G T C C T G A T A G C A C G T A C T G A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.56
Offset:11
Orientation:reverse strand
Alignment:GGGGTCAGBACTGCCA-
-----------TGCCAA
 A C T G C A T G A C T G A T C G A C G T A G T C C G T A A T C G A G T C C T G A T A G C A C G T A C T G A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

ESR2/MA0258.2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGGGTCAGBACTGCCA
-AGGTCACCCTGACCT
 A C T G C A T G A C T G A T C G A C G T A G T C C G T A A T C G A G T C C T G A T A G C A C G T A C T G A G T C A G T C G T C A
A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.55
Offset:10
Orientation:forward strand
Alignment:GGGGTCAGBACTGCCA---
----------CTGCCCGCA
 A C T G C A T G A C T G A T C G A C G T A G T C C G T A A T C G A G T C C T G A T A G C A C G T A C T G A G T C A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCAGBACTGCCA
CTCCAGGGGTCAATTGA----
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A T C G A G T C C T G A T A G C A C G T A C T G A G T C A G T C G T C A
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.53
Offset:9
Orientation:forward strand
Alignment:GGGGTCAGBACTGCCA---
---------GGTGCCAAGT
 A C T G C A T G A C T G A T C G A C G T A G T C C G T A A T C G A G T C C T G A T A G C A C G T A C T G A G T C A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.53
Offset:10
Orientation:forward strand
Alignment:GGGGTCAGBACTGCCA---
----------ATGCCAACC
 A C T G C A T G A C T G A T C G A C G T A G T C C G T A A T C G A G T C C T G A T A G C A C G T A C T G A G T C A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C