Information for 18-GCGCGGCCAATGA (Motif 33)

A C T G A G T C A T C G A T G C C T A G C T A G A T G C A G T C C G T A C G T A A C G T A C T G T C G A
Reverse Opposite:
A G C T A G T C C G T A A C G T A C G T A C T G A T C G A G T C A G T C A T C G T A G C A C T G G T A C
p-value:1e-7
log p-value:-1.758e+01
Information Content per bp:1.833
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif18.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets54.4 +/- 22.3bp
Average Position of motif in Background56.1 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.79
Offset:4
Orientation:forward strand
Alignment:GCGCGGCCAATGA-
----AGCCAATCGG
 A C T G A G T C A T C G A T G C C T A G C T A G A T G C A G T C C G T A C G T A A C G T A C T G T C G A A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GCGCGGCCAATGA
-ACTAGCCAATCA
 A C T G A G T C A T C G A T G C C T A G C T A G A T G C A G T C C G T A C G T A A C G T A C T G T C G A
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCGCGGCCAATGA-
AAATGGACCAATCAG
 A C G T A C T G A G T C A T C G A T G C C T A G C T A G A T G C A G T C C G T A C G T A A C G T A C T G T C G A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCGCGGCCAATGA-------
--TGGACCAATCAGCACTCT
 A C T G A G T C A T C G A T G C C T A G C T A G A T G C A G T C C G T A C G T A A C G T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GCGCGGCCAATGA-
-----GACAATGNN
 A C T G A G T C A T C G A T G C C T A G C T A G A T G C A G T C C G T A C G T A A C G T A C T G T C G A A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCGCGGCCAATGA
---VRAACAATGG
 A C T G A G T C A T C G A T G C C T A G C T A G A T G C A G T C C G T A C G T A A C G T A C T G T C G A
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GCGCGGCCAATGA
----TGCCAA---
 A C T G A G T C A T C G A T G C C T A G C T A G A T G C A G T C C G T A C G T A A C G T A C T G T C G A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCGCGGCCAATGA
---AAAACAATGG
 A C T G A G T C A T C G A T G C C T A G C T A G A T G C A G T C C G T A C G T A A C G T A C T G T C G A
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GCGCGGCCAATGA-
----RAACAATGGN
 A C T G A G T C A T C G A T G C C T A G C T A G A T G C A G T C C G T A C G T A A C G T A C T G T C G A A C G T
A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCGCGGCCAATGA
---VRRACAAWGG
 A C T G A G T C A T C G A T G C C T A G C T A G A T G C A G T C C G T A C G T A A C G T A C T G T C G A
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G