Information for 10-KYCATGGMCTCWGTWG (Motif 14)

A C T G A G C T A G T C G T C A A C G T A C T G A C T G G T A C A T G C A C G T A G T C C G T A A C T G A C G T C G A T A C T G
Reverse Opposite:
A G T C G C T A C G T A A G T C C G A T A C T G C G T A A T C G C A T G A G T C A G T C C G T A A C G T A C T G C T G A G T A C
p-value:1e-11
log p-value:-2.554e+01
Information Content per bp:1.863
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 27.5bp
Average Position of motif in Background75.4 +/- 12.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:KYCATGGMCTCWGTWG---
----TGWCCTCARNTGACC
 A C T G A G C T A G T C G T C A A C G T A C T G A C T G G T A C A T G C A C G T A G T C C G T A A C T G A C G T C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:KYCATGGMCTCWGTWG
---CTGACCTTTG---
 A C T G A G C T A G T C G T C A A C G T A C T G A C T G G T A C A T G C A C G T A G T C C G T A A C T G A C G T C G A T A C T G
A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:KYCATGGMCTCWGTWG
----TGACCTYA----
 A C T G A G C T A G T C G T C A A C G T A C T G A C T G G T A C A T G C A C G T A G T C C G T A A C T G A C G T C G A T A C T G
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:KYCATGGMCTCWGTWG
NTCAAGGTCA------
 A C T G A G C T A G T C G T C A A C G T A C T G A C T G G T A C A T G C A C G T A G T C C G T A A C T G A C G T C G A T A C T G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---KYCATGGMCTCWGTWG
GGGGCCGAGGCCTG-----
 A C G T A C G T A C G T A C T G A G C T A G T C G T C A A C G T A C T G A C T G G T A C A T G C A C G T A G T C C G T A A C T G A C G T C G A T A C T G
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--KYCATGGMCTCWGTWG
TTGCCATGGCAACN----
 A C G T A C G T A C T G A G C T A G T C G T C A A C G T A C T G A C T G G T A C A T G C A C G T A G T C C G T A A C T G A C G T C G A T A C T G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---KYCATGGMCTCWGTWG
GTTGCCATGGCAACCG---
 A C G T A C G T A C G T A C T G A G C T A G T C G T C A A C G T A C T G A C T G G T A C A T G C A C G T A G T C C G T A A C T G A C G T C G A T A C T G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--KYCATGGMCTCWGTWG
TTGCCATGGCAACC----
 A C G T A C G T A C T G A G C T A G T C G T C A A C G T A C T G A C T G G T A C A T G C A C G T A G T C C G T A A C T G A C G T C G A T A C T G
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:KYCATGGMCTCWGTWG
GTCACGCTCNCTGA--
 A C T G A G C T A G T C G T C A A C G T A C T G A C T G G T A C A T G C A C G T A G T C C G T A A C T G A C G T C G A T A C T G
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:KYCATGGMCTCWGTWG----
----TGGACTTTGNNCTNTG
 A C T G A G C T A G T C G T C A A C G T A C T G A C T G G T A C A T G C A C G T A G T C C G T A A C T G A C G T C G A T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G