Information for 7-CTGAAGGGHTTTTAAC (Motif 10)

A G T C A G C T C T A G C G T A C T G A A C T G A C T G A C T G G A C T A C G T A C G T A G C T C A G T G T C A C T G A A G T C
Reverse Opposite:
A C T G A G C T A C G T G T C A C T G A G T C A C G T A C G T A A G T C G T A C A G T C A G C T A C G T A G T C C T G A C T A G
p-value:1e-11
log p-value:-2.734e+01
Information Content per bp:1.766
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.5 +/- 26.4bp
Average Position of motif in Background31.4 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTGAAGGGHTTTTAAC
NTCAAGTGGN------
 A G T C A G C T C T A G C G T A C T G A A C T G A C T G A C T G G A C T A C G T A C G T A G C T C A G T G T C A C T G A A G T C
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTGAAGGGHTTTTAAC
NTCAAGTGG-------
 A G T C A G C T C T A G C G T A C T G A A C T G A C T G A C T G G A C T A C G T A C G T A G C T C A G T G T C A C T G A A G T C
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTGAAGGGHTTTTAAC
NANTTTCAAGTGGTTAN---
 A C G T A C G T A C G T A C G T A G T C A G C T C T A G C G T A C T G A A C T G A C T G A C T G G A C T A C G T A C G T A G C T C A G T G T C A C T G A A G T C
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGAAGGGHTTTTAAC
CTYRAGTGSY------
 A G T C A G C T C T A G C G T A C T G A A C T G A C T G A C T G G A C T A C G T A C G T A G C T C A G T G T C A C T G A A G T C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTGAAGGGHTTTTAAC
-TTAAGTGCTT-----
 A G T C A G C T C T A G C G T A C T G A A C T G A C T G A C T G G A C T A C G T A C G T A G C T C A G T G T C A C T G A A G T C
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTGAAGGGHTTTTAAC
NATTTAAGTACTTNAAA-
 A C G T A C G T A G T C A G C T C T A G C G T A C T G A A C T G A C T G A C T G G A C T A C G T A C G T A G C T C A G T G T C A C T G A A G T C
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTGAAGGGHTTTTAAC
BTBRAGTGSN------
 A G T C A G C T C T A G C G T A C T G A A C T G A C T G A C T G G A C T A C G T A C G T A G C T C A G T G T C A C T G A A G T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTGAAGGGHTTTTAAC
-TTRAGTGSYK-----
 A G T C A G C T C T A G C G T A C T G A A C T G A C T G A C T G G A C T A C G T A C G T A G C T C A G T G T C A C T G A A G T C
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTGAAGGGHTTTTAAC
AATTTCAAGTGGCTTN---
 A C G T A C G T A C G T A G T C A G C T C T A G C G T A C T G A A C T G A C T G A C T G G A C T A C G T A C G T A G C T C A G T G T C A C T G A A G T C
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTGAAGGGHTTTTAAC
-TTAAGTGGN------
 A G T C A G C T C T A G C G T A C T G A A C T G A C T G A C T G G A C T A C G T A C G T A G C T C A G T G T C A C T G A A G T C
A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T