Information for 3-CTGACATTATTCA (Motif 3)

A G T C C G A T A C T G C T G A A T G C C T G A A C G T C G A T C G T A A C G T A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A G T C A A C G T C G T A G T C A A G C T A T C G A G C T A G T C C G T A A C T G
p-value:1e-16
log p-value:-3.747e+01
Information Content per bp:1.836
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.3 +/- 24.9bp
Average Position of motif in Background31.4 +/- 12.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CTGACATTATTCA-
----GAATATTCAT
 A G T C C G A T A C T G C T G A A T G C C T G A A C G T C G A T C G T A A C G T A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTGACATTATTCA
-ATGCATAATTCA
 A G T C C G A T A C T G C T G A A T G C C T G A A C G T C G A T C G T A A C G T A C G T A G T C C G T A
A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGACATTATTCA
-RGCCATYAATCA
 A G T C C G A T A C T G C T G A A T G C C T G A A C G T C G A T C G T A A C G T A C G T A G T C C G T A
A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTGACATTATTCA--
---NNATGASTCATH
 A G T C C G A T A C T G C T G A A T G C C T G A A C G T C G A T C G T A A C G T A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C T G C T A G T C G A C G A T C A T G G C T A A T C G C G A T G T A C G C T A A G C T G T A C

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGACATTATTCA-
TCATGAATWATTCAT
 A C G T A G T C C G A T A C T G C T G A A T G C C T G A A C G T C G A T C G T A A C G T A C G T A G T C C G T A A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

JUND/MA0491.1/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTGACATTATTCA--
----NATGAGTCACN
 A G T C C G A T A C T G C T G A A T G C C T G A A C G T C G A T C G T A A C G T A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C

BATF::JUN/MA0462.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTGACATTATTCA
--GAAATGACTCA
 A G T C C G A T A C T G C T G A A T G C C T G A A C G T C G A T C G T A A C G T A C G T A G T C C G T A
A C G T A C G T C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTGACATTATTCA
---TCATCAATCA
 A G T C C G A T A C T G C T G A A T G C C T G A A C G T C G A T C G T A A C G T A C G T A G T C C G T A
A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CTGACATTATTCA-
----GATGAGTCAT
 A G T C C G A T A C T G C T G A A T G C C T G A A C G T C G A T C G T A A C G T A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T A C G T G C A C G A T C A T G C G T A A T C G C G A T G T A C C G T A A G C T

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CTGACATTATTCA-------
------ACATTCATGACACG
 A G T C C G A T A C T G C T G A A T G C C T G A A C G T C G A T C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G