Information for 6-CGAAGTATAT (Motif 12)

A T G C C T A G T C G A C G T A A C T G A C G T C G T A A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G A T C G T A A G T C C G A T A C G T A G T C T A C G
p-value:1e-10
log p-value:-2.362e+01
Information Content per bp:1.864
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif27.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets49.7 +/- 20.7bp
Average Position of motif in Background43.8 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CGAAGTATAT---
--AAGGATATNTN
 A T G C C T A G T C G A C G T A A C T G A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PB0163.1_Six6_2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGAAGTATAT-------
ANNNGGATATATCCNNN
 A T G C C T A G T C G A C G T A A C T G A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CGAAGTATAT-
TATTGTTTATT
 A T G C C T A G T C G A C G T A A C T G A C G T C G T A A C G T C G T A A C G T A C G T
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CGAAGTATAT--
--ATGMATATDC
 A T G C C T A G T C G A C G T A A C T G A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

TBP/MA0108.2/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CGAAGTATAT---------
----GTATAAAAGGCGGGG
 A T G C C T A G T C G A C G T A A C T G A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0080.1_Tbp_1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CGAAGTATAT-----
TCTTTATATATAAATA
 A C G T A T G C C T A G T C G A C G T A A C T G A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGAAGTATAT--
--ATGAATATTC
 A T G C C T A G T C G A C G T A A C T G A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CGAAGTATAT---------
----GTATAAAAGGCGGGG
 A T G C C T A G T C G A C G T A A C T G A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGAAGTATAT
NGAAGC----
 A T G C C T A G T C G A C G T A A C T G A C G T C G T A A C G T C G T A A C G T
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T

PB0198.1_Zfp128_2/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CGAAGTATAT-------
---TGTATATATATACC
 A T G C C T A G T C G A C G T A A C T G A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C